| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_0047 |
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| Symbol | |
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| ID | 8426969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum acetoxidans DSM 771 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013216 |
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| Strand | - |
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| Start bp | 49431 |
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| End bp | 51647 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 645032442 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003189633 |
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| Protein GI | 258513411 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00846465 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGATCC TTAGTTTCAA AATACCTTTT AAACATATTG CTATTTTCCT TTTATTTATT
CAGGGTATTA TATTGATCGG TTATCTATAC TTCAATAATC AGCAATTTAA TATAAAAACA
GCTATTATTT TCTTATCAGT TGCTTCTTCT TGGCCCATAA TTTACCATTA CTTATATGAG
AAGGATTATA AATCATATTT ATTATCAATA CAAAACAGAT ATTTAACAAA ATATGCAAAT
GATATAGTTT TTTTACTTGA CAGTAATTTT AACTTTATAG AGATCAATGA TAAAGCAATA
AAAACGTATG GTTATTCTCA TGAGGAATTT TTTAAAATGA AATTTTATAA CCTGTGCGAC
CAAGAAAAAT ATTCGGAAGA CGATGAAGTT TATACAAAAA TTGATTCACA TGATGGCTAT
ATTTATGAAA CTATACACAA GAAAAAAGAT GGAAGCACTT TCCCTGTAGA AATAAGTTCG
CGTACGATTA TTGCCGGAGG GAAAAAACAC TATCATTCAA TTATCCGCAA TATAACCGAA
CGTAAAAAAA CAGAAGCAAT TCTGAGAAGA TATCAACTGC TATCAGAAAA TACCCGGGAC
ATTATTCTAT TCGTTCGCAG TGACGGGCAA ATTATTGACG CAAACTTAGC AGCTCTGCAG
GCTTACGGCT ATAATAGTGA AGATATTCTC ACGCTAAATA TTCAGAATAT TAGAGAGAAG
GCAACCCGAA CGTTAATAAA TTACCAATTG CGGGAGGCCG TAGATAAAGG AATCGTGTTT
GAAACAATAC ACCAGCGTAA AGACGGCAGC ACTTTCCCGG TGGAAGTCAG TTCAAAAGGC
GCATTGCTTG AGGGAGAACA GATAGTAGTA AGTATCATCC GCGATATAAG CGAGCGCAAA
AAGTTTGAAC TGCAAATTAA ACACCTGGCC ACACATGATT ACCTGACAAA CATACCAAAC
AGGTACTACC TGGAGGAATC ATTAAAGCGC TACGTGGCCA AAGCAAAACG CGGAACAACC
AGCGCATTAC TGCTATTGGA TCTGGACAAC TTTAAACTGG TAAACGACAC CAAAGGACAT
GTGGCAGGCG ATGAGTTATT AATCATATTT ACAAAAATAC TAAAAGCCAA TTTACGTGAA
GAGGATCTGT TGACCAGGCT GGGAGGAGAT GAATTCGCTG TACTTCTGGA AGGAATAAGT
ATAAATGAAG CAACGGAAAT CGCAGAAAAA TTGCGGGCTG TAATTGACAA CCAAACAATT
GCCTTGAGTC TGATTAATGT AAGGTTTAAC CTTACTGTAA GTATCGGTTT ATCAATGGTG
GACGGAAGCA TGGATCCGAT CCAAATATTA TCACAGGCTG ACAGAGCTTT GTATATTGCT
AAGGAAAGTG GGCGCAACCG GGTAATCACC ATTAAGGGTG TTGAAGATAC AGAGGAAAAA
CTAACCATGA CTAACCAGTT AATAAGTTTA ATAAAAAAAG CATTAAGAGA TAACCTGTTT
GAAATTGTCT TCCAACCAAT AGTAAAAGTT GCCCATAGGG ATATCATTCA CTTTGAAGCA
CTGCTCAGGC TGAAGGATGA CCACGGCCAT TTGATTTCTC CGGGACATTT TATTCCGGTG
GCTGAACGTT TCGGCATGAT GGCCCAGATT GACTTGTGGG TACTTCAGTC AGTTATTGAT
ACTCTGCGCA TGCATGAAGG AATAAGCATA TTTATTAACA TCTCGGGCAC CAGTTTAAGC
AACGAGCGCC TGCTGAATCA ATTTGAAAGC ATCGTTCTGA ACAGCAGCGT GGAACCTTCG
CGACTGGGTT TTGAAATTAC AGAAACCGCC GCAGCCAGAG ATATGATTAA GGCTGAACAA
TGGATCCGCA AATTAAAAAG ACTGGGTTGT AAATTCGCCA TAGACGACTT TGGCATAGGT
TTTTCATCTT TTTCTTATCT GCGCCTGCTG CCAGTGGATT ACTTAAAGAT AGACGGATCC
TTTATATACA ATATTGATCA AGAAACGACA AACCTTGCAT TGGTTAAAGC TATGAATACT
GTTGCACACA CTTTAGATAA GAAAACCATA GCTGAGTTTG TTGAAAACGA AAATATTTTA
CAAATTCTAA ATGAGCTTGA CGTTGACTAT GCGCAGGGAT ATTTTATCGG CATACCTGCG
CAAATTGAAC AGTATGTGAT GAATAAAAAT AATGAAAAAC AAGAGCATCT GGATTAA
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| Protein sequence | MMILSFKIPF KHIAIFLLFI QGIILIGYLY FNNQQFNIKT AIIFLSVASS WPIIYHYLYE
KDYKSYLLSI QNRYLTKYAN DIVFLLDSNF NFIEINDKAI KTYGYSHEEF FKMKFYNLCD
QEKYSEDDEV YTKIDSHDGY IYETIHKKKD GSTFPVEISS RTIIAGGKKH YHSIIRNITE
RKKTEAILRR YQLLSENTRD IILFVRSDGQ IIDANLAALQ AYGYNSEDIL TLNIQNIREK
ATRTLINYQL REAVDKGIVF ETIHQRKDGS TFPVEVSSKG ALLEGEQIVV SIIRDISERK
KFELQIKHLA THDYLTNIPN RYYLEESLKR YVAKAKRGTT SALLLLDLDN FKLVNDTKGH
VAGDELLIIF TKILKANLRE EDLLTRLGGD EFAVLLEGIS INEATEIAEK LRAVIDNQTI
ALSLINVRFN LTVSIGLSMV DGSMDPIQIL SQADRALYIA KESGRNRVIT IKGVEDTEEK
LTMTNQLISL IKKALRDNLF EIVFQPIVKV AHRDIIHFEA LLRLKDDHGH LISPGHFIPV
AERFGMMAQI DLWVLQSVID TLRMHEGISI FINISGTSLS NERLLNQFES IVLNSSVEPS
RLGFEITETA AARDMIKAEQ WIRKLKRLGC KFAIDDFGIG FSSFSYLRLL PVDYLKIDGS
FIYNIDQETT NLALVKAMNT VAHTLDKKTI AEFVENENIL QILNELDVDY AQGYFIGIPA
QIEQYVMNKN NEKQEHLD
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