| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aaci_1977 |
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| Symbol | |
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| ID | 8425499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013205 |
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| Strand | - |
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| Start bp | 2024931 |
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| End bp | 2026037 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 645028094 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_003185378 |
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| Protein GI | 258511944 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.129295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCGAAGA CGAATGACGA AATTCGCGAC GAGGATCAGG GTATCACCCT TCAAGAAGCC
AAGCAGCAAT TGATCGAACT GGGCAAAAAG CAAGGCTCGT TGACATATGA GGAGATCTCG
GATCGGCTCA GCTCGTTCGA CATGGACGCC GACGCGATGG ACGATTTCTT TGAACAGTTA
GCGGAACTCG GGATCGACGT CGTGAACGAG CGGGACGAAG AGGGCGGCCG CGAGGACGAC
GATTACGATC TCGACGATCT CTCCGTTCCG CCCGGCGTCA AGATTTCCGA TCCGGTCCGG
ATGTACCTGA AGGAGATTGG GCGCGTGCCG CTCTTGTCGG CCCAAGAGGA GATTGAGCTC
GCGAAGCGCA TTGAGCAGGG AGACGAAGAG GCGAAGCAGC GCTTGGCGGA GGCCAACCTG
CGCCTTGTCG TCAGCATCGC GAAGCGATAC GTCGGACGCG GTATGCTGTT TCTCGACCTG
ATCCAGGAGG GCAACCTCGG GTTGCTCAAG GCGGTCGAGA AGTTTGACTA CCGGAAGGGT
TACAAGTTCA GCACGTACGC GACGTGGTGG ATCCGGCAGG CCATCACGCG GGCCATCGCC
GATCAGGCGC GGACCATCCG CATTCCGGTG CACATGGTGG AGACCATCAA CAAGCTGATC
CGCGTGTCCC GGCAGCTGCT CCAGGAATTG GGGCGTGAGC CCACGCCGGA GGAGATTGCC
GCCGAGATGG ACCTGACGCC GGAGAAGGTG CGCGAGATTC AGAAGATCGC ACAGGAACCT
GTGTCGCTGG AGACGCCCAT TGGCGAGGAG GACGACTCGC ACCTCGGCGA TTTCATCCCG
GACGACGAGG CGCCCGCTCC CGCCGACGCG GCGGCTTACG AGCTCTTGAA GGAGCAGTTG
GAGGACGTGC TGGACACGCT CACGGAGCGC GAGGAAAACG TGCTGCGGTT GCGCTTCGGA
CTGGATGACG GCCGCACGCG CACCCTCGAA GAAGTCGGGA AGGTGTTCGG GGTGACGCGG
GAACGGATCC GCCAAATTGA GGCGAAGGCG CTGCGCAAGC TGCGCCATCC GAGCCGAAGC
AAGCGGCTCA AGGACTTCCT CGAGTGA
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| Protein sequence | MAKTNDEIRD EDQGITLQEA KQQLIELGKK QGSLTYEEIS DRLSSFDMDA DAMDDFFEQL
AELGIDVVNE RDEEGGREDD DYDLDDLSVP PGVKISDPVR MYLKEIGRVP LLSAQEEIEL
AKRIEQGDEE AKQRLAEANL RLVVSIAKRY VGRGMLFLDL IQEGNLGLLK AVEKFDYRKG
YKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLI RVSRQLLQEL GREPTPEEIA
AEMDLTPEKV REIQKIAQEP VSLETPIGEE DDSHLGDFIP DDEAPAPADA AAYELLKEQL
EDVLDTLTER EENVLRLRFG LDDGRTRTLE EVGKVFGVTR ERIRQIEAKA LRKLRHPSRS
KRLKDFLE
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