Gene Aaci_1862 details

Gene Information

• Locus tag: Aaci_1862
• Symbol: sdhA
• ID: 8425379
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
• Kingdom: Bacteria
• Replicon accession: NC_013205
• Strand: -
• Start bp: 1910787
• End bp: 1912547
• Gene Length: 1761 bp
• Protein Length: 586 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 645027974
• Product: succinate dehydrogenase flavoprotein subunit
• Protein accession: YP_003185263
• Protein GI: 258511829
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
• TIGRFAM ID: [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCAAACA CGAGCATCAT TGTCGTGGGA GGCGGCCTGG CCGGCCTGAT GACCACCATC 
AAGGTGGCGG AAGCTGGCGT GCCGGTGAAA CTGTTCTCCT TGGTACCTGT AAAACGTTCC 
CATTCCGTGT GTGCTCAAGG CGGCATCAAC GGCGCCGTGA ACACGAAGGG CGAGGGCGAC 
TCGCCGTGGG AGCACTTCGA CGACACCATC TACGGCGGCG ACTTTCTGGC CAACCAGCCT 
CCGGTTCTGG GCATGTGCGA GGCCGCGCCG GCCATCATCT ATTTGATGGA CCGCATGGGC 
GTCATGTTCA ACCGCACGCC GGAAGGACTG CTTGACTTCC GCCGGTTCGG CGGCACGAAG 
CATCACCGCA CGGCGTTCGC GGGCGCCTCG ACAGGGCAGC AACTGCTTTA CGCGTTGGAC 
GAACAGGTTC GCCGATATGA AGTGGCTGGC CTCGTCGAGA AATACGAGGG ATGGGACTTC 
CTCGGCGCCG TGATCGACGA CGAGCAGATC TGCCGCGGCA TTGTGGCGCA GGACCTGCGG 
TCCATGGAGA TCCACTACTT CCGCGCCGAT GCGGTGGTCA TGTGCACCGG GGGCAACGGA 
CTCATTTTCG GCAAGAGCAC CAACTCGATG ATCAACACGG GTTCGGCGGC ATCGGAGCTG 
TACCAGCAGG GCGTCAAGTA CGCGAATCCG GAGATGATCC AGGTTCACCC GACGGCCATC 
CCCGGGGACG ACAAGCTCCG CCTCATGTCT GAGTCCGCGC GCGGCGAGGG AGGCCGCGTC 
TGGACGTACA AGGACGGCAA GCCTTGGTAC TTCCTGGAGG AGTGGTATCC CGAGTACGGA 
AACCTGGTGC CCCGCGACAT CGCGACGCGC GCCATTCACA AGGTCTGCGT GGAGATGGGG 
CTTGGCGTCG ACGGGCAAAA CATGGTCTAT CTCGACCTGA CCCACATCCC GGCGGACGTG 
CTGGATCGCA AGCTGGGCAA CATTCTCGAT ATCTATGAGA AGTTCGTCGG AGACGATCCG 
CGCAAGGTTC CGATGAAGAT CTTCCCTGCT GTGCACTATT CGATGGGCGG ACTGTGGGTC 
GACTACGACC AGATGACCAA CATCCCGGGC CTGTTCGCCG CGGGCGAGGC CGATTATCAA 
TACCACGGCG CGAACCGCCT CGGCGCAAAC TCGCTCGTGT CCTGCATTTA CGGCGGCATG 
ATCGCGGGTC CGAACGCCGT GCGCTGGGCG AAGAATCTGC GCAAGTCCGC GGATAGCCTG 
CCCGAGTCGC TGTTCGAGCA GTACCGCCGC AAGTACGAGC AGGAATTCGA GGAAATTCTC 
AAGCTCGACG GCGACGAGAA CCCGTACCAG TTGCACCGCG AACTTGGCAA GTGGATGACG 
GATCACGTCA CGGTGGTGCG CTACAACGAC AAGCTCAAGG AGACGGACGC CAAGATCCAG 
GAGCTTCAGG AGCGCTGGAA GCGGATCAAG ATGTCGGACA CGTCGCGCTG GGAGAACCAG 
GTCGCCCAGT TCACGCGCCA CCTGAAGAAT ATGCTCATTA TGGCGCGCGC CATCACCATC 
GGAGCGCTGA TGAGAAACGA GAGCCGTGGC GCACACTACA AGCCGGAGTT CCCAGAGCGC 
GACGACGAGA ACTTCCTGAA GACGACCATC GCCGAGTACA CGCCGGACGG GCCGAAGATC 
TCGTACGAGG ACGTCGACGT CTCGCTGATC AAGCCGCGTA AGCGCAACTA CGCGGTGAGC 
AAGGAGGCGA CCAAGGAATG A 

 

Protein sequence

MANTSIIVVG GGLAGLMTTI KVAEAGVPVK LFSLVPVKRS HSVCAQGGIN GAVNTKGEGD 
SPWEHFDDTI YGGDFLANQP PVLGMCEAAP AIIYLMDRMG VMFNRTPEGL LDFRRFGGTK 
HHRTAFAGAS TGQQLLYALD EQVRRYEVAG LVEKYEGWDF LGAVIDDEQI CRGIVAQDLR 
SMEIHYFRAD AVVMCTGGNG LIFGKSTNSM INTGSAASEL YQQGVKYANP EMIQVHPTAI 
PGDDKLRLMS ESARGEGGRV WTYKDGKPWY FLEEWYPEYG NLVPRDIATR AIHKVCVEMG 
LGVDGQNMVY LDLTHIPADV LDRKLGNILD IYEKFVGDDP RKVPMKIFPA VHYSMGGLWV 
DYDQMTNIPG LFAAGEADYQ YHGANRLGAN SLVSCIYGGM IAGPNAVRWA KNLRKSADSL 
PESLFEQYRR KYEQEFEEIL KLDGDENPYQ LHRELGKWMT DHVTVVRYND KLKETDAKIQ 
ELQERWKRIK MSDTSRWENQ VAQFTRHLKN MLIMARAITI GALMRNESRG AHYKPEFPER 
DDENFLKTTI AEYTPDGPKI SYEDVDVSLI KPRKRNYAVS KEATKE