| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aaci_1062 |
|---|
| Symbol | |
|---|
| ID | 8424562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013205 |
|---|
| Strand | - |
|---|
| Start bp | 1130843 |
|---|
| End bp | 1132018 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 645027180 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003184488 |
|---|
| Protein GI | 258511054 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.489924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAACGG GCCGAGTATT CTCATACACA ACCAAGTCGA ACGAAAAAAA GTACGGATAT
ACGATTACCA TTACGCCCGC GGACCCACAA ACAGGAAGGT ACCCTCAAGT GACTCGAAAG
GGCTTTAAGA GCGAACGAGC TGCAAAGTCC GCCATGATGG AGCATCTGCG TTCGCTCGAA
GACACTCCAG TCGTACATGC CAAATCGTTC ACTTTACATG AATGGGCAAG TCGCTGGTTT
GCCGATAAAT CGTCATCCTT GCGGCCGTGG ACGCGTCGAA CTTATCATCA TGTCTTGCAA
GCCTACATTC TCCCCGAACT TGGTAAGATG CCGATCTCAA AAATTGAGGC CCGACATATC
CAAGCACTAT ATCGCAAGCT AAGCAATCGA TTGAAACCAG TGACCGTACA TCGAATACAC
CGGGTGCTCA AGACGTGCTT ACTTGCTGCG GTGAAAGCAG GATACTTGGA TAAGTCTCCG
TTCTTGAACG TAGAACCACC AGAACATAAA ACGCCTCCGA AGCCAGTTTT GTCTGTGAAC
GACGCCTTTC GGCTCTTAGC GTGGCTACGA GAACATCGAC CAACGAGCTA TATGGCGGCG
TTCTTGGCCA TTCATACCGG CATGCGCATG GGGGAGATCG CTGGGCTGCA ATGGAGAGAC
ATCGATTTGG ACACGGGCGT GATACAACTT GAACGAACTC GCTACAGGCC CAAGGGTGGG
CAAGACTTTT TGGGGCCGCC CAAGACATTT GGAAGTCGTC GCCGTATTGT CGTCACGCGA
GAAGTAGTGG ACGAACTCAG GAGATGGAAA CAATCGCAAC AAGAAATCGA GCGCGAATCT
TGGACTCCTG AATCCTTTGT CGTTCGCCTC CCAAACTCCG CGCCCCCGTC ACCCGCTTCC
TTTAACAACG CGATCCAAAA CGCAAGAAAA GAGCTTGGGT TGCCGCCCGT TTCCTTTCAT
GGATTGCGAC ATACCCATGC GACGTGGTTG CTAGAAAGCG GGGTCGATCT CAAAATTGTG
AGCGAACGTT TGGGGCATAG TTCAATTACG ATAACGGCAG ACATATACGC GCATGTGACG
GATGCGCTAC AACGCGAAGC GATTGAAAAA CTGCAACGAA TGATGCGTTC AAGACGCACA
AACAACAGTG GCTCTGATGA TGAAGAGGAC TTGTAA
|
|---|
| Protein sequence | MTTGRVFSYT TKSNEKKYGY TITITPADPQ TGRYPQVTRK GFKSERAAKS AMMEHLRSLE
DTPVVHAKSF TLHEWASRWF ADKSSSLRPW TRRTYHHVLQ AYILPELGKM PISKIEARHI
QALYRKLSNR LKPVTVHRIH RVLKTCLLAA VKAGYLDKSP FLNVEPPEHK TPPKPVLSVN
DAFRLLAWLR EHRPTSYMAA FLAIHTGMRM GEIAGLQWRD IDLDTGVIQL ERTRYRPKGG
QDFLGPPKTF GSRRRIVVTR EVVDELRRWK QSQQEIERES WTPESFVVRL PNSAPPSPAS
FNNAIQNARK ELGLPPVSFH GLRHTHATWL LESGVDLKIV SERLGHSSIT ITADIYAHVT
DALQREAIEK LQRMMRSRRT NNSGSDDEED L
|
|---|
| |