Gene Aaci_0944 details

Gene Information

• Locus tag: Aaci_0944
• ID: 8424437
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
• Kingdom: Bacteria
• Replicon accession: NC_013205
• Strand: +
• Start bp: 1018830
• End bp: 1019399
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 645027057
• Product: ABC-type thiamin-related transport system, permease component 1, predicted
• Protein accession: YP_003184373
• Protein GI: 258510939
• COG category: [S] Function unknown
• COG ID: [COG4721] Predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGAGGT GGAAGTTGCG CGAAGTCATC TTAATGGTCG TGTTGGCCAT TGTCTGCGGA 
GGCATTTACC GCGTCTGGGA CGTGCTGTAC GCGCTCATTC CTGCGACCGC GTACGCGCTT 
CAGGGCGTAA TGACGGGGCT CTGGATGATC GCCGGCGTGA TGGTTCCGTA CATCGTGCGG 
CGTCCGGGCG CGGCGCTCAT CGCGGAGCTG GTGGCGGCCG CCGTCGAGCT TTTGCTCGGC 
GAACAGTGGG GGCTCGCCAA CATGATCTCG GGCCTCATTC AGGGCATCGG TTCGGAAATC 
GCCTTCCTGA TCTTCGGTTA TCGCGTGTGG AACACGGGCA CCTGCACGTT GTCCGGCGTG 
CTGGCGTCTG CGGCCTTCAT GTTCCAATGG TACTTCCAAT ATGGTGGCGA CAAGCTGCAC 
CTCGGCACCC AGATCGCGTT TGTCCTCATC TCGCTTGTGA GCGGCGCGGT GCTCGGCGGC 
CTGTTGCCGA AGGCGCTCGC CGATGCGCTC GCTCGCACTG GCGCGCTGCG GAATTACGAG 
ATCGCGAAGC GGTCGGTGAA GTCGGCATGA 

 

Protein sequence

MSRWKLREVI LMVVLAIVCG GIYRVWDVLY ALIPATAYAL QGVMTGLWMI AGVMVPYIVR 
RPGAALIAEL VAAAVELLLG EQWGLANMIS GLIQGIGSEI AFLIFGYRVW NTGTCTLSGV 
LASAAFMFQW YFQYGGDKLH LGTQIAFVLI SLVSGAVLGG LLPKALADAL ARTGALRNYE 
IAKRSVKSA