| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aaci_0182 |
|---|
| Symbol | |
|---|
| ID | 8423648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013205 |
|---|
| Strand | + |
|---|
| Start bp | 198637 |
|---|
| End bp | 202188 |
|---|
| Gene Length | 3552 bp |
|---|
| Protein Length | 1183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 645026291 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_003183634 |
|---|
| Protein GI | 258510200 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGGTC TCGTCGAACT CATGGCCGCG GACGGGGCGC TTTCGTCATT GGCGGATGGG
ATGGGGCCGC GCAGAAACGA CATACTCATC ACGGGCGTGA CCGGGGCCGG GCGGCAGCTC
GTGATGGCGG CCTTGTACCA TCTCCGCAAT CGCCGTCTCC CAGAGTCGAT GATTGTGGTG
ACGCATACGG CCAGTCACGC CCAGACCATC TGGGAGGACT TGAAGGAGTA CCTGCCGGAT
GCGCGCGTCT ATCTCTATCC CGAGCGAGAC AACGCGCTCG TCGATTACCT GGCGTCGTCG
TCGGACGTAC TGGCGGATCG GCTGCACGTC CTTGAGGCCC TCGCGCAGGA GGGCCCTGTC
GTTGTGGTCA CGACCCTTTT GGCCGCCTGG CAGCCGGTGA CGAAAAAGAG CCATTTTCTA
CACTCGCTGG TGAACCTCGC GGTAGGTGAA TCGAAGCCGA TTGACGACGT CGTAGCGCAG
CTAGTGCGCG GCGGCTACGA GCGCGTGAGC CTCGTGGAGA GCCGCGGCCA GTTCAGCGTG
CGCGGCGGCA TCCTCGACGT CTTTCCGATG GGCCACGATC TCCCCTACCG CATCGAGTGG
TTCGACACGG ACATTGACTC CATCCGGACG TTCGATCCCG CCACGCAGCG ATCCCAGGAC
AAGCGGGATC GCGTGTCGTT TGGCCCTGCA TTCGACCTGA TGCTTCCTCA GCCCGTTGCG
GACAAGGTGG CGGATGAACT CGAGGCGCGG CTTGAAGCCA GGCTGAAGAC GGTGACGGAT
GCGGCGCTCC GGGATCGGCT GGAGCAGTCC ATCTCCGCGG ATATCCGCAA GCTGCGCGAG
GGGCAGCCGT TCGCGGGCGT GGCTCGTTAT CAGCTTCTGT ATCCCGAACA CGCGGACACC
CTGTTCGATC ACGTCCCCCA GCCTGCGTTC GTCTGCTTCG ACGAGACGGC TCGCATCCTG
GAGCGCGCGG ACGTGCTCGA GAAGGAGTTT CGCGAGTGGC TGTCGGGCGC CATGATGCGG
GGCGAGGTGC TCTCGGGCAC GGTCGACGCC ATTCACTACG AGGCGAAGTT TCAAGAGTTG
AATCGGCCGA AGGTGCACTT CGCGACGTTC GCCCACACGC GCGGCAGTCA GCGGTATCAG
CAGGTGCTCA ACATCTCCGC GCGCAGCATG CAGAATTTCC ACGGGCAGAT GAACGTGTTG
AAACAAGAGC TCGCGCGCTG GGAGAAGGCG CACACGCAGG TGGTGTTTGC GGCCGCGACC
AAGGAGCGGG CGGATCACCT GGCGCGCGTC CTGGACGACT ATCGCATCCA GGCCGATCAG
GTGGAGGTCT TTACGCCGGG ATCGAAGGTG CCGCAGATCG TCGTCGCCAA CCTGTCAAGC
GGGTTCGAGT TGCCGATGCA CCGCATCGCC GTGATCGTCG AGACCGAGGT GTTCACGGCG
AAGCGGAAGC ATCGCCAGAC GCGCGCGCAG GTCTCGGATG CGGAGCGGAT CAAGAGCTAC
CAGGAACTGA ATGTCGGCGA CTACGTGGTG CACGTGAATC ACGGCATTGG CCGGTACATG
GGTATCAAGA CGCTTGAGGT CGATGGTCGC CGCAACGACT ACCTGTACCT GAGCTACGCG
GGCGGCGACA GCCTGTACGT GCCGGTGGAC CAGATCGATC AGATCCAGCG GTACATCGGC
TCCGGCGAGA AGGAGCCGAA GCTGCACAGC CTCGGGTCGA GCGAATGGCA GAAGACGAAG
AACCGCGTCA AGAAGTCGGT GCGCGACATC GCGGGCGATC TCCTGAAGCT CTACGCGAAG
CGCGAGGCGA CGCCCGGGCA CGCGTTCTCG CCCGACACGC CATGGCAGGC GGACTTCGAG
AACATGTTCC CGTACGAGGA GACGCCGGAC CAGCTTCGCG CCATCGCGGA GATCAAGCGG
GACATGGAGA AGCCGCGCCC GATGGATAGG CTCCTGTGCG GCGACGTGGG CTACGGCAAG
ACGGAGGTCG CCATGCGCGC GGCGTTCAAG GCGGTCATGG ACGGGAAACA AGTCGCGGTG
CTGGTGCCGA CGACGGTCCT CGCGCAGCAG CACTACGAGA CGTTCAAGGA GCGGTTCGCC
GGCTTCCCAG TGAAGATTGA GATGCTGAGC CGCTTCCGGA CGCGCAAAGA GACGCAGGAG
GTGTTGAAGG GCCTCAAGGA GGGGACCATC GACATCGTCA TCGGCACGCA CCGGCTTTTG
CAGAACTCGG TGCAGTTCAA GGACCTGGGG CTTCTGATTG TGGACGAGGA ACAGCGCTTC
GGCGTGACCC ACAAGGAAAA GCTGAAGCAG TTGCGCGCGA ATGTGGACTG TTTGACGCTG
ACCGCGACGC CCATCCCGCG CACGCTCCAC ATGTCCATGC TCGGCGTGCG CGATCTGTCC
ATCATCGAGA CGCCGCCCGA GAACCGGTTT CCGGTCCAGA CGTACGTCGT GGAGTACAAC
GAGGGGCTTG TCAAAGAGGC CATCGAGCGC GAACTCGCCC GCGGCGGACA GGTGTACTTC
GTGTACAACG ACGTCCAGAC CATCCACCGC ATGGCCGAGC GCGTGCAGTC GCTCGTGCCC
GATGCGCGCG TGAGCGTGGC GCACGGTCAG ATGGCGGAGG CGGAGCTCGA GCGCGTGATG
CTCGACTTTC TCGAGGGCGA GTACGACGTG CTCGTCACCA CCACCATCAT CGAGACGGGG
CTCGACATTC CGAACGTGAA CACCTTGATT GTGTACGACG CCGACAAGTT CGGTCTGTCC
CAGTTGTATC AGCTGCGCGG CCGCGTCGGC CGATCCAACC GGATTGCGTA CGCATATTTC
ACCTATCAGC CGGCCAAGGT GCTGTCGGAG GTCGCGGAAA AGCGGCTGGC GGCCATCAAG
GAGTTCACCG AGCTCGGCAG CGGCTTCAAG ATCGCCATGC GTGACCTGTC CATCCGCGGC
GCTGGCAACT TGCTCGGGGC CGAGCAACAC GGGTTCATCA ACTCTGTGGG CTTCGACATG
TACACGGAGC TCTTGCAGCA GGCCATTCGC GAGCTGCGCG GCGAGCAGCT GGAGAAGCCC
GTCGAACCGA CCATCGACGT GCCCGTCGAG GCGTACATTC CAGACACCTA TATCTCCGAT
CCGTCTCAGA AGGTGGCCAT GTACAAGCGG TTCCGGGCGA TTCAGGCTGT GTCCGAGGCG
GACGATCTCG AGGACGAGCT CATCGATCGC TACGGCGATC CGCCGCAGGA GGTGCGCAAT
CTGCTCGACG TGACGAGGCT CAAGAGCCTC GCGATGCAGG CGCACGCGGA TCACATCGCG
ACGCAGGGTG CCGACACGAC CGTGCGGTTT CCGAACGAGA AGCATGCGCC CGTCGATTAT
CCGAAGCTCC TGTCCATGGC GGTCAAGCAC AAGGCGCAGG TCACCTCGCG GCCGAACGGC
ATGATCTTTG TCGCGTTCCG AACCAAGGGC CTCGCGGGGG ACGAGATCGT CCGGAGGATC
ATCGCCTTCT TGACGGATTA CCTGGAGATG GTGCGGCAGT CGAAAAAGCA GGAAGAGGTG
GCGGGCGTCT GA
|
|---|
| Protein sequence | MKGLVELMAA DGALSSLADG MGPRRNDILI TGVTGAGRQL VMAALYHLRN RRLPESMIVV
THTASHAQTI WEDLKEYLPD ARVYLYPERD NALVDYLASS SDVLADRLHV LEALAQEGPV
VVVTTLLAAW QPVTKKSHFL HSLVNLAVGE SKPIDDVVAQ LVRGGYERVS LVESRGQFSV
RGGILDVFPM GHDLPYRIEW FDTDIDSIRT FDPATQRSQD KRDRVSFGPA FDLMLPQPVA
DKVADELEAR LEARLKTVTD AALRDRLEQS ISADIRKLRE GQPFAGVARY QLLYPEHADT
LFDHVPQPAF VCFDETARIL ERADVLEKEF REWLSGAMMR GEVLSGTVDA IHYEAKFQEL
NRPKVHFATF AHTRGSQRYQ QVLNISARSM QNFHGQMNVL KQELARWEKA HTQVVFAAAT
KERADHLARV LDDYRIQADQ VEVFTPGSKV PQIVVANLSS GFELPMHRIA VIVETEVFTA
KRKHRQTRAQ VSDAERIKSY QELNVGDYVV HVNHGIGRYM GIKTLEVDGR RNDYLYLSYA
GGDSLYVPVD QIDQIQRYIG SGEKEPKLHS LGSSEWQKTK NRVKKSVRDI AGDLLKLYAK
REATPGHAFS PDTPWQADFE NMFPYEETPD QLRAIAEIKR DMEKPRPMDR LLCGDVGYGK
TEVAMRAAFK AVMDGKQVAV LVPTTVLAQQ HYETFKERFA GFPVKIEMLS RFRTRKETQE
VLKGLKEGTI DIVIGTHRLL QNSVQFKDLG LLIVDEEQRF GVTHKEKLKQ LRANVDCLTL
TATPIPRTLH MSMLGVRDLS IIETPPENRF PVQTYVVEYN EGLVKEAIER ELARGGQVYF
VYNDVQTIHR MAERVQSLVP DARVSVAHGQ MAEAELERVM LDFLEGEYDV LVTTTIIETG
LDIPNVNTLI VYDADKFGLS QLYQLRGRVG RSNRIAYAYF TYQPAKVLSE VAEKRLAAIK
EFTELGSGFK IAMRDLSIRG AGNLLGAEQH GFINSVGFDM YTELLQQAIR ELRGEQLEKP
VEPTIDVPVE AYIPDTYISD PSQKVAMYKR FRAIQAVSEA DDLEDELIDR YGDPPQEVRN
LLDVTRLKSL AMQAHADHIA TQGADTTVRF PNEKHAPVDY PKLLSMAVKH KAQVTSRPNG
MIFVAFRTKG LAGDEIVRRI IAFLTDYLEM VRQSKKQEEV AGV
|
|---|
| |