| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aaci_0139 |
|---|
| Symbol | |
|---|
| ID | 8423605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013205 |
|---|
| Strand | + |
|---|
| Start bp | 154256 |
|---|
| End bp | 155776 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 645026249 |
|---|
| Product | GAF modulated transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003183592 |
|---|
| Protein GI | 258510158 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGTC CGTCGCCGCT TCCGCCGTCA GGTGAATCGC TTCCGAAAAA AACCCTACAG
TCGGTCCTGC AGACCCTGCA GGCGCAGGAA GCGGAGTGCC GCATGAACTG GAGCCTGCGC
ATGGCGCGGC TCGAGATTCC GGAAGTCACG CAGCCGGTGT TGACGCACCT TTTTCAGTTT
CTTCTGAGAA ATATTGAAAG CGCTCTCACG GACGAGGAGG CGCTCGTTCG CGCGTTTCAG
GCCGAGGTCA TGCGCGCCCA GCCGAGCGTG ATGGCTTCGG ACGTGCTGGT CGTGGTCGGC
TTCCTGGAAG AACTGATGAT CTCCATGGCG TGGCGGATGG TCGAGCCGGC TCAGATCGAG
TCGTTCGTGC GCTTCGCGCA TCGGCTCTGC TTCGATCTCG CCCGCGAGGC GCTTTCTGAA
GGATACTTCC CGGCGAAGCT TGCGGCCCGC ACGCAGTACA TGTGTGACGC GCCGCTCGTG
AACTGGCTGA ACGTGCTGAG CGCCGAATGC GACTGGAAGT GGTTCGCGCT CGCTCGGACG
AGACCTCAGG TGAACGTCGA GGAGTCCGCG CTCTACGTCC CCGAGACCCG CATGTGGACG
GCCGAGGCGC CACATCCTGA GCGGACGGAA CAGGTGCGAA AGGCTTTAGC GGACGGATCG
CCCTTTGTGG CCGCGGTCGG GGACAACCTG TACGCGGTGG CGGAGGCGCG GCACGATCCG
CTCACGATTC GCCGCTTCCG CCAGACAGCG CAGTGGATCC AGAACGCGCT TCAGCTCTCC
ATCTACGTCC GCGGCGGGCA CGGCAGCGGA CGCGCGGAGC TACTCGAGGT CTTGCTGGAG
TTCGACGACG TGCTTGCGTC GGCCGGCGAC ATGAACGAGC TTTTGACCTG CGTTGTGGAA
CACGTGTGCC GGCGCGGCGG GTTCAAGCGC AGTGCGCTCT TCTTGTACAA TCCCATCACC
CAGACGGTCG AGGGCGTGCA CGGCTACAAT GTGAACGTCG AAGAGATCAT GCGGATTCGC
CAGACGGATC GCGATATCCC CTCGCTCACA CAGTTCGTGC AGATCGCCAA GCCCGTGTTT
CTGAAGGACG TGGGCAACAT CCTTCCGCAA TCCTACGTGA ACAAGTTTCA CCTCTCGTCG
CTCCTTGTGT GCCCAGTGAT TGACAATCGG CGCATGCTCG GGATCATGCT GCTCGATCAC
GGCGGGCGGC CGTTCACGCC GGACAATGCC ACGATTCGCA TGGTGGAGGC CATGCTGGCG
CGGGCCGGGC GGATGATCGT GATGCAGATG TATCGGCAGG CCGGTGCGGC GCCCATCACG
CCGCTCACGA CCTTGACCAA GCGTGAGCGC GAGATCCTTC AGCTCATCGC GGACGGCGTG
GACACGAAGG AAATTGGGCG CGCCCTGCAC ATCAGCGACT ATACGGTGAC GGAGCACGTG
AGCTCCATTT TGCGGAAACT GGGGGCGAAA AACCGCACGG AGGCGGTGGC CAAGGCGATG
CGCGAGCGCA TCATTCACTG A
|
|---|
| Protein sequence | MSRPSPLPPS GESLPKKTLQ SVLQTLQAQE AECRMNWSLR MARLEIPEVT QPVLTHLFQF
LLRNIESALT DEEALVRAFQ AEVMRAQPSV MASDVLVVVG FLEELMISMA WRMVEPAQIE
SFVRFAHRLC FDLAREALSE GYFPAKLAAR TQYMCDAPLV NWLNVLSAEC DWKWFALART
RPQVNVEESA LYVPETRMWT AEAPHPERTE QVRKALADGS PFVAAVGDNL YAVAEARHDP
LTIRRFRQTA QWIQNALQLS IYVRGGHGSG RAELLEVLLE FDDVLASAGD MNELLTCVVE
HVCRRGGFKR SALFLYNPIT QTVEGVHGYN VNVEEIMRIR QTDRDIPSLT QFVQIAKPVF
LKDVGNILPQ SYVNKFHLSS LLVCPVIDNR RMLGIMLLDH GGRPFTPDNA TIRMVEAMLA
RAGRMIVMQM YRQAGAAPIT PLTTLTKRER EILQLIADGV DTKEIGRALH ISDYTVTEHV
SSILRKLGAK NRTEAVAKAM RERIIH
|
|---|
| |