Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Elen_1311 |
Symbol | |
ID | 8415606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Eggerthella lenta DSM 2243 |
Kingdom | Bacteria |
Replicon accession | NC_013204 |
Strand | + |
Start bp | 1575542 |
End bp | 1576771 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 645024277 |
Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
Protein accession | YP_003181669 |
Protein GI | 257791063 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.046516 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCCCAAG CCTCAAGCAA GCAAGCCCAA GAGCGGAACA ACGCGGCGGT TGCCTCGATC GAAGCCGAAG ACATCCTGGA GGAAGACGCC CTCGACGACG AGCCCGATGT GGTCGACGCC GGCGACGGAC TCGACGACGA TAAGCTTGAA AGCCCCCTGT CCGATGACAG CGACGACGAA GACCTGCTCG AAGGCATTCC TGAAGAGGAG CTTAAGGCGA CGGTCGAGGT TCAGCTGCCC AAGGTGGCGG GCAAGAGCAA GGTGCGCTCC GTGCGCAAGC GCAATGCCGA CGCCAGCGTG ACCATGCTCA CGGGCGACCC CGTCCGCATG TACCTCAAGG AGATCGGCAA GGTCCCGCTG CTCACGGCCG CCGAAGAGAT CGACCTCGCC ATGAAGATCG AGGCCGGCGT GGCCGCCATG GAGGAGCTTG AGAAGGCCGA GGACGAGGGC ATCGAGCTCG AACGCCGCGA GAAGCGCCGC CTCGGCCGCA TCGAGCAGGT GGGCATCGAC GCGAAGCAGC AGCTTATCGA GGCGAACCTG CGTCTCGTCG TGTCCATCGC CAAGCGCTAC GTAGGACGCG GCATGCTGTT CCTCGACCTT ATCCAGGAGG GCAACCTCGG CCTCATCCGC GCCGTCGAGA AGTTCGACTA CACGAAGGGC TTCAAGTTCT CGACGTACGC CACCTGGTGG ATCCGCCAGG CCATCACGCG CGCCATCGCC GATCAGGCCC GCACCATCCG CATTCCCGTG CACATGGTGG AGACCATCAA CAAGCTCGTG CGCATCCAGC GCCAGCTGTT GCAGGAGCTC GGCCGCGAGC CCAGCCCCGA GGAGATCGGC AAGGAGATGG GTCTGCCCGC CGAGCGCGTG CGCGAGATCC AGAAGATCTC GCAGGAGCCC GTGTCGCTGG AAACGCCTAT CGGCGAGGAG GAGGACTCCC AGCTGGGCGA CTTCATCGAG GACGACGCCG CCGTGGTGCC GCCTGACGCC GCCTCGTTCA GCATGCTGCA AGAGCAGCTG TCGAAGGTGC TCGACGGCCT GGCCGAACGC GAGCGCAAGG TGATCAGCCT GCGCTTCGGC CTGGAGGACG GCCATCCCCG CACGCTCGAG GAGGTCGGAC GCGAGTTCGG CGTCACGCGC GAGCGCATCC GCCAGATCGA GAGCAAGACG CTGGCGAAGC TGCGCCACCC GTCCCGCTCG AGCAAGCTGA AAGACTACCT GGAAGATTAA
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Protein sequence | MAQASSKQAQ ERNNAAVASI EAEDILEEDA LDDEPDVVDA GDGLDDDKLE SPLSDDSDDE DLLEGIPEEE LKATVEVQLP KVAGKSKVRS VRKRNADASV TMLTGDPVRM YLKEIGKVPL LTAAEEIDLA MKIEAGVAAM EELEKAEDEG IELERREKRR LGRIEQVGID AKQQLIEANL RLVVSIAKRY VGRGMLFLDL IQEGNLGLIR AVEKFDYTKG FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLV RIQRQLLQEL GREPSPEEIG KEMGLPAERV REIQKISQEP VSLETPIGEE EDSQLGDFIE DDAAVVPPDA ASFSMLQEQL SKVLDGLAER ERKVISLRFG LEDGHPRTLE EVGREFGVTR ERIRQIESKT LAKLRHPSRS SKLKDYLED
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