| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_0149 |
|---|
| Symbol | |
|---|
| ID | 8414433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | + |
|---|
| Start bp | 206635 |
|---|
| End bp | 208125 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 645023129 |
|---|
| Product | glutamate decarboxylase |
|---|
| Protein accession | YP_003180532 |
|---|
| Protein GI | 257789926 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | [TIGR01788] glutamate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.283505 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAC AGACATCTAC CAGCAAGATC CTCGACAGCA TGGACGAGGG CACCAAGTAC
TCGACGCCCA TCTTCGGCTC CGAGGCGTCC GACGTGGCCA TGCCGCGCCT CAAGATGAAC
GATAAGCCGG TCGAGCCGCG CATCACGTAC GAGATGATCA AGGAATACCT GTCCATCGAG
GGCAACGCCA CGCAGAACCT CACCACGTTC TGCCAGACGT ACATGGAGCC CATGGCCACG
AAGATCATGG CCGAGACGAT GGAGAAGAAC GCCATCGACA AGGACGAGTA CCCCATGACG
GCCGACCTCG AGAACCGCTG CGTCGCCATG ATCGGCAACC TGTGGCATGC CGACCCGGCC
GAGGAGCCCA TGGGCACGTC CACCGTCGGC TCGTCCGAGG CGTGCATGCT GGGCGGCTTG
GGCATGCTGT TCCGCTGGAA GAAGCTGGCG AAGGACGCGG GCATCGACAT CTACACGGCG
CAGCGCCCCA ACCTGGTGAT TTCCGCGGGC TACCAGGTGT GCTGGGAAAA ATTCTGCCGC
TACTGGGACA TCGAGATGCG CCTCGTGCCG CTTGAGAAGG ACCACCTGTC GCTGAACATG
GACACGGTCA TGGACTACGT GGACGACCAC ACCATCGGCA TCGCGGCCAT CCTGGGCATC
ACGTACACCG GCAAGTTCGA CGACGTGCAG AAGCTCGACG AGCTGGTGGA AGCGTACAAC
CAGCAGCATC CGAAGCTGCC GATCCGCATT CACGTGGACG GCGCGTCGGG CGGCATGTTC
GCCCCGTTCG TCGAGCCCGA CCTGGTATGG GACTTCCAGT TGAAGAACGT GTGGTCCATC
AACTGCTCCG GCCACAAGTA CGGCCTCGTG TACCCCGGCA TCGGCTGGGT GGTGTGGCGC
AGCAAGGAGG CGCTGCCCGA GGACCTGATC TTCTGGGTGA GCTACCTGGG CGGCGAGGAG
GCCACGATGG CCATCAACTT CTCGCGCTCC GCGTCGCAGA TCGTGGGCCA GTACTACGTG
CTGATGCGCA ACGGCTTCGA GGGCTTCAAG GAGATCCAGG AGCGCACGCT CGACGTGGCA
CGCTACCTGG CCGCCGAGCT CAAGGAGATG GGCGTCTTCG AGATCTACGA GGACGCGTCG
CACATTCCCA TCGTGTGCTG GGGCTTGAAG GACGACGCCG GCGTGGAGTG GTCGCTGTAC
GACCTGTCCG ACCGCCTGCG CATGAGCGGC TGGCTGGTGC CGGCGTACCC GATGCCGGCC
GACATGCAGG ACACCACCGT CCAGCGCGTC GTGGCGCGTG CCGACTTCTC GATGCAGCTG
GCCATCAAGC TGGTCGAGGA CATGAAGAAG GAGATGGACA CGCTGAACAA GGCGAAGTTC
GTCACCGGCA ACACCCAGGG CGTCATCCGC ACCGGCTTCA ACCACGGCGG CCGCTCCGCC
GTCGACAAGG GCGAAAAGGT GCAGACGAAG GCCCCGACGC CCCAGAAATA A
|
|---|
| Protein sequence | MKEQTSTSKI LDSMDEGTKY STPIFGSEAS DVAMPRLKMN DKPVEPRITY EMIKEYLSIE
GNATQNLTTF CQTYMEPMAT KIMAETMEKN AIDKDEYPMT ADLENRCVAM IGNLWHADPA
EEPMGTSTVG SSEACMLGGL GMLFRWKKLA KDAGIDIYTA QRPNLVISAG YQVCWEKFCR
YWDIEMRLVP LEKDHLSLNM DTVMDYVDDH TIGIAAILGI TYTGKFDDVQ KLDELVEAYN
QQHPKLPIRI HVDGASGGMF APFVEPDLVW DFQLKNVWSI NCSGHKYGLV YPGIGWVVWR
SKEALPEDLI FWVSYLGGEE ATMAINFSRS ASQIVGQYYV LMRNGFEGFK EIQERTLDVA
RYLAAELKEM GVFEIYEDAS HIPIVCWGLK DDAGVEWSLY DLSDRLRMSG WLVPAYPMPA
DMQDTTVQRV VARADFSMQL AIKLVEDMKK EMDTLNKAKF VTGNTQGVIR TGFNHGGRSA
VDKGEKVQTK APTPQK
|
|---|
| |