| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_0009 |
|---|
| Symbol | |
|---|
| ID | 8414284 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | + |
|---|
| Start bp | 11586 |
|---|
| End bp | 13253 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645022980 |
|---|
| Product | multi antimicrobial extrusion protein MatE |
|---|
| Protein accession | YP_003180392 |
|---|
| Protein GI | 257789786 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.64807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.000313529 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTATCGAG CAGCTGCCGC GCAAGCGGCG CGCCTGTCGT CGAAAGCGCG CGGAGCCGCG
AAGCGCGCGC AAACGACGCG CCGCGAACGC GCCCTGCGTT CTCCGGCGGA GAAAACCACA
GCCGGCGACG TGTTCGTGCT TTCCGTCCCG CTGTTCGTGG AACTGTTCAT GCAAATTATG
ATCGGGAACA TCAACCAATT TATGCTGGCG CCGCTGGGAA CCGAGCCGGC CGCCGCGGTG
GGAAACGCGC TGCAGATCCT CAACATCGTG ACCATCGCGC TGTCGGCCAT GGGCACGGCT
TCCACCGTGC TCGTGACCCG CGTGCTGGGG AAATCGTCGG CGACCAGCAA GGTGTCGGAG
ATCGCCACTG TGGCCCTCGT GGTGAACGTA GCGCTCGCGG CGGCCATGAC CGCGGTGCTG
TTCCTCTTTT GGCCGCAGTT CTTCTCCTGG CTGCACATCG ACGGGTCCAT CACGGGAATG
GCGTCGTCGT TCCTGCTGAT CGTCGGCTCC ACCACGGTGG TGCAAGGCGC GTTCTTCGCG
TTCACGGCTT TGCTGCGCAG CTACGCGCGC GGCGCCGACG TGATGCGCGC CAGCCTGGCG
ATGAACGCGG TGAACATCGC AGCCAGCGCC GTGCTCATCG GCGGCGTCGC GTTCGTCCCG
GCGTTCGGGG TGGAAGGCGC GGCGGTAGCG AACGTGGTGG CGCGCGTCGC AGGCCTCGCG
GTGGCATGCC GCCTCGTGCT GCGCCATACC GATGTGCGCA TGCGCCTGGC GTACCTGCGC
CCGTTCCCCT GGAAGACGCT TCGGCGCATG CTGGGCGTGG GCATCCCCTC GTCGGGCGAG
CAGATGAACT ACGACCTCGC ACAGATCGTC ATCCTGTCGT TCATCAACGT GCTGGGCACC
ACGGTGGTCA CCGTGAAGGT GTACTGCTCG ATGATCGCGG GCATCGCCTA CCTGTATTCC
ATCGCGTTGT CGCAGGCGAC GCAGATCGTG CTGGGGTATC TGTTCGGCGC GGGCAAGTTC
GATGCGGTCG CGCGGCGCGT GTGGGTGGCC GATCTCATCG CCGTGGCGCT GACCACCTGC
GTGTCCACGC TCATCTGGAT CAACGCCGAC GCGGTGTTCG GCCTGTTCAC CGCCGATCCG
ATGGTGCACG AGCTGGGTCG CCAGGTGCTG CTTGTGGAGA TATTCCTGGG TATCGGGCGT
GCGCTCAACA TCGTGATGGT AAAGGCGCTC ATCGCGGTGG GCGACGTGAA GACCCCGGTG
ACGGTGAACG TCATCTCGTC GTGGATATTC GCGGTGGCAG GCGGCTATGC GCTGGGAATC
GGCTTAGGCT GGGGCATCGT GGGCATGTGG GTGGCCATGT GCGTGGACGA GTGGCTGCGC
GCCGGGTTCC TGCTGGTAAC GTTCGCACGC GGAGGATGGC GGCGGCGCGC TCAGGAGCGG
CGGCCCGAGC CTCGGCTCGA AACGCCTCCG GATGCCGTGG AGACTCCGGC CGTGTCGTAC
GCGAAGCCGT CGATGTTCGT GTTGAAGAAG CCCAGCGCAA CGGGCCGTCC GAAAGAACCG
GGCGCCGTCA GCCTGTCGGC GATTATGGGG CTGGCGCTGG CCGACGACGG GGGCTTGACG
CATGGGATCG TTCAGGCCGT CATCGATGCC TTGACGGCAC TGTGGTAG
|
|---|
| Protein sequence | MYRAAAAQAA RLSSKARGAA KRAQTTRRER ALRSPAEKTT AGDVFVLSVP LFVELFMQIM
IGNINQFMLA PLGTEPAAAV GNALQILNIV TIALSAMGTA STVLVTRVLG KSSATSKVSE
IATVALVVNV ALAAAMTAVL FLFWPQFFSW LHIDGSITGM ASSFLLIVGS TTVVQGAFFA
FTALLRSYAR GADVMRASLA MNAVNIAASA VLIGGVAFVP AFGVEGAAVA NVVARVAGLA
VACRLVLRHT DVRMRLAYLR PFPWKTLRRM LGVGIPSSGE QMNYDLAQIV ILSFINVLGT
TVVTVKVYCS MIAGIAYLYS IALSQATQIV LGYLFGAGKF DAVARRVWVA DLIAVALTTC
VSTLIWINAD AVFGLFTADP MVHELGRQVL LVEIFLGIGR ALNIVMVKAL IAVGDVKTPV
TVNVISSWIF AVAGGYALGI GLGWGIVGMW VAMCVDEWLR AGFLLVTFAR GGWRRRAQER
RPEPRLETPP DAVETPAVSY AKPSMFVLKK PSATGRPKEP GAVSLSAIMG LALADDGGLT
HGIVQAVIDA LTALW
|
|---|
| |