| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1360 |
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| Symbol | |
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| ID | 8414251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1536456 |
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| End bp | 1537415 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645022963 |
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| Product | D-alanine/D-alanine ligase |
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| Protein accession | YP_003180375 |
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| Protein GI | 257785158 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACACGTG AAGAGTTAAA AAAACTTCAT GTAGCAGTTG TTTCAGGCGG CTGGTCAGAC
GAGCATGAGA TTGCAATGGA GTCTGGCAAG CAGTGTGCAG CAGCACTTAA AGAGGCCGGC
TTTATCAATG TTGACCTGCT TGATGTTGCA GAGAAAGACT TTGTGGTTGC CCTTGCTCAG
GGTGATTATG ATGTCGTGTA CGTTGCAATG CATGGCCGTT TTGGTGAGGA TGGCTGCATC
CAGGGTCTTC TTGAGATTCT GCACATTCCA TACACGTTTT CGGGCGTTCT TGCGTCTGCT
ATGGGAACAG AAAAAGAGCT GTCGAAGCTT ATGTATAGGC AGGCAGGCAT TCCAACTCCT
AGGGGTATTG ACGTTCCTTC AGGCACTGTC TTTACAGATG AGCAAGTTGA TAAGCTTATT
GAGGACCTCG GCTTCCCAAT GTTTGTCAAG CCCTCTGGCA ACGGCTCCAG CTACGGTGTT
ACGCGCGTTA CTTCGCGAGA AGAGCTTCCC GCTGCACTTA AACTTGCAGG TGAGCAGGGC
GAGCGTATTC TGATTGAGGA GTGTGTAGTA GGAACAGAGA TTACTGTTCC CGTTATTGGT
AACGACAACC CAACCGCTCT ACCAATCGTT GAGATTGTTA CTGGTGATGA GTTCTACAGT
ATTAAGACAA AATACGAGCC TGCATCTTTG CACCACGTTA TTCCCGCTCG TCTTGAGCCA
GCAGTGTATG CGCGTGCCCA GGAGCTGGCA ATTAAGGCCC ACAATGCGCT TGGTTGCCGC
GGTGTTTCTC GTAGTGACTT TATTGTTACA GAAGACGGTG AGCCAGTAGT GCTTGAGACA
AACACCATCC CTGGTATGAC TGCACGTTCT TTGCTGCCTG ATTCTGCTCG TACCGGCGGT
ATTGATTTCC CTGAGCTCTG TACTCGATTT ATTGAGTTTG CGCTTGAGGA TCGTCAGTAG
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| Protein sequence | MTREELKKLH VAVVSGGWSD EHEIAMESGK QCAAALKEAG FINVDLLDVA EKDFVVALAQ
GDYDVVYVAM HGRFGEDGCI QGLLEILHIP YTFSGVLASA MGTEKELSKL MYRQAGIPTP
RGIDVPSGTV FTDEQVDKLI EDLGFPMFVK PSGNGSSYGV TRVTSREELP AALKLAGEQG
ERILIEECVV GTEITVPVIG NDNPTALPIV EIVTGDEFYS IKTKYEPASL HHVIPARLEP
AVYARAQELA IKAHNALGCR GVSRSDFIVT EDGEPVVLET NTIPGMTARS LLPDSARTGG
IDFPELCTRF IEFALEDRQ
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