| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1328 |
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| Symbol | |
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| ID | 8414213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1491648 |
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| End bp | 1495202 |
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| Gene Length | 3555 bp |
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| Protein Length | 1184 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645022925 |
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| Product | pyruvate ferredoxin/flavodoxin oxidoreductase |
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| Protein accession | YP_003180343 |
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| Protein GI | 257785126 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit |
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| TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000692132 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCAAGAA AGTTTAAGTC CATGGACGGT AACAACGCCG CGGCTTACGT GTCGTATGCG
TTTACTGAGG TAGCGGGCAT TTACCCAATT ACCCCATCAA GTCCAATGGC AGACTATGTT
GACCAGTGGT CCGCTCAGGG CGTAAAGAAC ATCTTTGGCA CAACCGTCAA GGTTGTCGAG
ATGCAGTCCG AGGCTGGCGC AGCTGGTGCT GTTCACGGTT CTCTTGGTTC GGGTGCTCTG
ACCACTACTT ACACCGCTTC TCAGGGTCTC TTGCTCATGC TTCCAAACAT GTACAAGATT
GCCGGCGAGC AGCTTCCTGG TGTTTTCCAC GTCAGCGCAC GTACCGTTGC AACCCATGCA
TTGAACATCT TTGGCGATCA CTCTGATGTT ATGGCTACTC GTCAGACTGG TTTTGCACTT
CTCGCAGAAG GCAACGTCCA GGAGGTTATG GATCTGGCTC CTGTTGCTCA CCTCGCAGCA
ATTAAGGGCA AGGTTCCATT TGTTAACTTC TTCGACGGCT TCCGTACTTC TCACGAGATT
CAGAAGGTTG CTGTTTGGGA TTATGCTGAC CTGGCTGAGA TGTGTGATAT GGATGCTGTT
CAGGCATTCC GTGATCACGC ACTGAACCCA GAGCATCCAG CAAGCCGTGG TTCCCACGAG
AACGGCGATA TCTTCTTCCA GCACCGCGAG GCATGCAACG AGGTTTATAA CCAGCTGCCA
GCAGTCGTTG AAGACTACAT GAACAAGATC AACGCTAAGC TTGGTACTGA TTACGGTCTG
TTCAACTACT ACGGTGCAGA AGACGCTGAT CGCGTTGTTA TCTGCATGGG TTCCTTCTGC
GATACCCTTG AAGAGGTTAT CGATTACCTG AATGCTCATG GCGAGAAGGT CGGTCTGGTT
AAGGTCCGCC TCTATCGTCC ATTCTCTGTA AAGCACTTTG TTGATGTTCT TCCTGAGTCC
GTCAAGAAGA TTGCTGTTCT CGACCGTACC AAGGAGCCAG GCTCCGTTGG TGAGCCTCTC
TACGAGGACG TTGTTTCTTC TCTCTATGAG GCTGGTCGTA CAGGCATTAA GGTTGTTGGC
GGTCGTTATG GCCTTGGTTC CAAGGACACC CCACCATCAT CTGCATTTGC AATCTTTGAG
GAGCTCAAGA AGGATAATCC TCAGCGCGAG TTCACCATTG GTATTGTTGA CGATGTTACC
AATCTGTCTC TCCCAGAGGA TCCTGAGGCT CCTAACACTG CAGCTGAGGG CACCATTGAG
TGCAAGTTCT GGGGTATCGG CGGCGACGGT ACCGTTGGTG CTAACAAGAA CTCCATTAAG
ATTATTGGTG ACCACACCGA TAAATATGTT CAGGCATACT TCCAGTATGA CTCCAAGAAG
ACTGGCGGCA TTACCATCAG CCACCTGCGT TTCGGTGATC ACAAGATTCG TTCTCCTTAC
TATGTCACCA AGGCAGACTT TGTTGCATGC CACGTCCCTG CATATATCAT CAAGGGCTAC
AAGATGGTCC GCGATGTCAA GCCTGGCGGT ACTTTCCTGG TCAACTGCCA GTGGGATGCA
GAGGAGTTTG CACACCACCT GCCAGCAGAG GCAAAGCGCT ACATTGCTAA GAACAACATC
AACGTTTATC TGATTAATGC AATTGACCTT GCCAAGGAAA TTGGTATGGG TAAACGCACT
AACACTATTC TTCAGTCTGC ATTCTTTGCT CTTGCAAAGG TTCTCCCAGA GGCAGACGCA
CTTCAGTACA TGAAGGATGC TGCAACTCAC TCTTACCTGA AGAAGGGTCA GAACGTCGTC
GATATGAACC ACAAGGCAAT CGACGCCGGC GCTACCGCAT TTACTAAGAT TGAGATTCCT
GCTGATTGGG CTTCTGCAGA GGATGCTCCT AGCACAATCA CCCTTGAGGG TCGTGAGGCT
CTGCTCAAGC AGGTTCGCGA CATCATGACA CCAGTCTCTC GTATGGAGGG TGACGCACTT
CCTGTTTCCG CATTTAAGAA CCACGTTGAC GGTCAGTTTG AACTTGGCGC TGCTGCGTAT
GAGAAGCGTG GCATTGCTGT TGTTGTTCCT GAGTGGAACG TCGAGAAGTG CATCCAGTGT
AACCAGTGCG CTTATGTCTG CCCACACGCA GTCATTCGTC CATTCGTCCT TACCGACGAA
GAGGTTGCTG CTGCACCAGC ACAGTCTCAG TTCAAGGATG CCGTTGGTCC TAAGGCTAAG
GGCTACAAGT TTGAGATTGC TATTTCTCAG CTCGACTGTA CTGGTTGCTC CAACTGCGTC
TACATCTGCC CTGCAGATGC TCTGACCATG AAGCCAATCG AGGAGCAAGA GTCCAAGCAG
GAGATCTTTG ATTACGCAGT TAATCACGTC TCCGAGAAGA CCGAGCTTGT CGCTAACAAC
GTTAAGGGAT CCCAGTTCAA GAAGCCTCTT CTTGAGTTCT CTGGTTCCTG CGCAGGCTGC
GCTGAGACCA GCTATGGTCG TCTGGTTACT CAGCTCTTCG GCGATCGTAT GTACATCTCC
AACGCAACTG GTTGCTCCTC TATTTGGGGT AACCCAGCTT CCTGCTCACC ATTCACTACC
GATGCAAATG GTCACGGTCC GGCATGGAAC AACTCCCTCT TCGAGGACAA CGCTGAGCAC
GGTATGGGTC TGATGCTTGG TCACCAGGCA CAGCAGAAGC GTCTTCTCGA GCTTGCTCAG
CAGCTTGTCG ATGAGGACGG CGCATCTCAG GACCTCAAGG ATGCTGCTAA GGCATGGATT
GAGTCCGTCA ACGACGCAGC CCTCTCGAAG GAAGCTTCCA AGACTTTTGT GGTTGAGCTT
GCTAAGTCTG ACCTTGCAAC AGCTAAGGAA ATCCTTGCTA ACAAGAGCTT CCTCACCAAG
AAGTCCTTCT GGATCTTCGG TGGCGACGGT TGGGCATACG ACATCGGCTT CGGTGGCCTT
GACCACGTTC TTGCTTCCGG CGAGGATATC AACGTCTTTG TCTTCGACAC TGAGGTTTAT
TCCAACACCG GTGGTCAGTC CTCTAAGGCT TCCCGTCTTG GCCAGGTTGC ACAGTTCGCT
GCAGCTGGTA AAGACATCAA GCAGAAGAAC CTTGCTGAGA TCGCTATGAC TTACGGTTAC
GTCTATGTTG CTCAGGTCTC CATGGGCGCA AACCTCCAGC AGACCCTCAA GGCAATTGCC
GAGGCAGAGG CTTATCCAGG ACCATCCCTC ATCATCGGTT ACTCCCCATG TGAGATGCAC
TCCATTAAGG GTGGCATGGC TCACGCACAG GAGGAGATGA AGAAGGCAGT CGATACTGGC
TACTGGAACC TCTATCGCTT CAACCCATCT GCACCAGCAG GTAAGAAGTT CACGCTCGAC
TCTAAGGCAC CTAAGGGTGG CTACCAGGAG TTCCTGATGA ACGAGGCTCG TTACAGCCGA
CTCACCCGCG AGTTCCCAGA GCACGCAGAG AAGCTCTTCA AGGAGAACGA GGAAGCCGCA
ATGGCTCGCT ACGATCACCT TGTACGCCTC TCCGAGCTCT ATGCAGCAGA GAAGAAGGAG
CAGCCTGAGG AGTAA
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| Protein sequence | MARKFKSMDG NNAAAYVSYA FTEVAGIYPI TPSSPMADYV DQWSAQGVKN IFGTTVKVVE
MQSEAGAAGA VHGSLGSGAL TTTYTASQGL LLMLPNMYKI AGEQLPGVFH VSARTVATHA
LNIFGDHSDV MATRQTGFAL LAEGNVQEVM DLAPVAHLAA IKGKVPFVNF FDGFRTSHEI
QKVAVWDYAD LAEMCDMDAV QAFRDHALNP EHPASRGSHE NGDIFFQHRE ACNEVYNQLP
AVVEDYMNKI NAKLGTDYGL FNYYGAEDAD RVVICMGSFC DTLEEVIDYL NAHGEKVGLV
KVRLYRPFSV KHFVDVLPES VKKIAVLDRT KEPGSVGEPL YEDVVSSLYE AGRTGIKVVG
GRYGLGSKDT PPSSAFAIFE ELKKDNPQRE FTIGIVDDVT NLSLPEDPEA PNTAAEGTIE
CKFWGIGGDG TVGANKNSIK IIGDHTDKYV QAYFQYDSKK TGGITISHLR FGDHKIRSPY
YVTKADFVAC HVPAYIIKGY KMVRDVKPGG TFLVNCQWDA EEFAHHLPAE AKRYIAKNNI
NVYLINAIDL AKEIGMGKRT NTILQSAFFA LAKVLPEADA LQYMKDAATH SYLKKGQNVV
DMNHKAIDAG ATAFTKIEIP ADWASAEDAP STITLEGREA LLKQVRDIMT PVSRMEGDAL
PVSAFKNHVD GQFELGAAAY EKRGIAVVVP EWNVEKCIQC NQCAYVCPHA VIRPFVLTDE
EVAAAPAQSQ FKDAVGPKAK GYKFEIAISQ LDCTGCSNCV YICPADALTM KPIEEQESKQ
EIFDYAVNHV SEKTELVANN VKGSQFKKPL LEFSGSCAGC AETSYGRLVT QLFGDRMYIS
NATGCSSIWG NPASCSPFTT DANGHGPAWN NSLFEDNAEH GMGLMLGHQA QQKRLLELAQ
QLVDEDGASQ DLKDAAKAWI ESVNDAALSK EASKTFVVEL AKSDLATAKE ILANKSFLTK
KSFWIFGGDG WAYDIGFGGL DHVLASGEDI NVFVFDTEVY SNTGGQSSKA SRLGQVAQFA
AAGKDIKQKN LAEIAMTYGY VYVAQVSMGA NLQQTLKAIA EAEAYPGPSL IIGYSPCEMH
SIKGGMAHAQ EEMKKAVDTG YWNLYRFNPS APAGKKFTLD SKAPKGGYQE FLMNEARYSR
LTREFPEHAE KLFKENEEAA MARYDHLVRL SELYAAEKKE QPEE
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