| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1310 |
|---|
| Symbol | |
|---|
| ID | 8414194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1474831 |
|---|
| End bp | 1475898 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022906 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_003180325 |
|---|
| Protein GI | 257785108 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.123154 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGACA AGCTAGAAAA AATCGTCGAT GCGTATGCTG AGCTTGAGCA AAAGCTTGCA
GATCCAGCTG TTGTTTCTGA TCCAAAAGAG TATGCTCGTG TTGCAAAGGA GCACTCTAAT
CAGGCGGACT TGGTTGCTCA CGCTAATAAG TACATCACTG CTCTTGACGA TATCGAAGCG
GCAAAGGAAC TTCTTAATGC TACTTCTGAT CCAGAAGAAA AAGAGATGCT GCAGGAAGAT
ATTGCTGCTA ATGAAGAGAT GCTCCCTCAG CTTGAGGATG AGATTAAGGT CATGCTGATT
CCAGGCGATC CAAATGACGA GAAGGACACT ATTGTTGAGA TTCGCGCTGG TGTTGGCGGT
GATGAGGCTG CAATTTTTGC GGGCGATCTC TTTAAGATGT ATGAGCGCTT TGCTGAGGCT
CGCGGGTGGA AGACAGAGAT TTTGTCCAGT TCTCCTTCTG AGGCAGGTGG CTTTAAGACC
ATTGAGTTTA AGGTTACAGG CGATAAGGTC TATTCAGTCA TGAAGTATGA GTCCGGCGTT
CACCGTGTTC AGCGCGTTCC TAAGACGGAG TCTCAGGGTC GTATTCAGAC CTCTACTGCA
ACCGTTGCAG TTCTCCCAGA GGCTGACGAG ATTGATATTC AGATTAACCA GGAAGATTTG
CGTATTGATA CCTACTGCGC ATCTGGCCCT GGTGGTCAGT GCGTTAACAC CACGTATTCT
GCAGTTCGTA TTACTCACCT GCCAACAAAC ACCGTTGTTC AGTCCCAGGA CCAGCGTTCT
CAGATTCAGA ATCGCGAGGT TTGTATGCAG ATGCTTCGCG CTCGTCTTTA CGAGATGGAG
CTTGAACGTC AACAGGCTGA GCAGGGTGCA GAGCGTCTTT CCCAGATTGG TCATGGTGCA
CGTTCAGAGA AGATTCGTAC GTACAACCAG CCACAGGATC GCGTAACCGA CCACCGCGTT
GGCTTTAACG GTACCTACAA CGGCGTTCTG TTGGGCGATA CACTGCCATC TGTCATTGAG
GCTCTAGCTG CAGCAGAGCG TGCCGAGAAA CTCGCTCAGG CTGTTTAA
|
|---|
| Protein sequence | MRDKLEKIVD AYAELEQKLA DPAVVSDPKE YARVAKEHSN QADLVAHANK YITALDDIEA
AKELLNATSD PEEKEMLQED IAANEEMLPQ LEDEIKVMLI PGDPNDEKDT IVEIRAGVGG
DEAAIFAGDL FKMYERFAEA RGWKTEILSS SPSEAGGFKT IEFKVTGDKV YSVMKYESGV
HRVQRVPKTE SQGRIQTSTA TVAVLPEADE IDIQINQEDL RIDTYCASGP GGQCVNTTYS
AVRITHLPTN TVVQSQDQRS QIQNREVCMQ MLRARLYEME LERQQAEQGA ERLSQIGHGA
RSEKIRTYNQ PQDRVTDHRV GFNGTYNGVL LGDTLPSVIE ALAAAERAEK LAQAV
|
|---|
| |