Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_1264 |
Symbol | |
ID | 8414143 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1419596 |
End bp | 1421656 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 645022856 |
Product | conserved repeat domain protein |
Protein accession | YP_003180280 |
Protein GI | 257785063 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA GTTTTCTTAA GAGAATCTCG GTTTTTCTAA CCATGATTAT GGCATGCTTG GTTATGTTTG TTAACACAGC TCAGGCATTT GATCGCCAGA AAGACGATAG TGATCTTACT CAGATTAACA TCTATCAGTT CACTATGACC AGGGATAACA TGACTGTTCT CTCACAAGGG GATGGGGTTA AACGCGTGGA GATTCCTGCG TCAGATACAG GTAATCTTCC TTCAACAGCT TTTGTTATGC AGCCTACTAA GGATGGCTCT AACCATCAGT ATAATCAGCC ACTTTCATTG AAGTTTTCTA ATGCTGGCAC CGTTGATGGT GAATCCGTTG ATGTTTATGT AACGGTTAAT TCTTTGGACC TTACCCTTAA AAATACAAAT GCAGACTACA ATAATCCTAA TAAGACTGAT GTTCCGTTTT TGACTGTTGA TGAAAACTGG GGAACAAAGT CTTTCTCGCT TATGGATTAT ATTGATGTGA ATCACCCTAG TTATACAGCA GACATGCTTG GATCCTATGC AATTAACGCT AATGTAACTA TGGAATTAAG GTACTCTGAT GGAACGCCGT GCAACCTTAA ACTTGTCATG CAGCCAAGTG ATATTGACGT TTTAAATGGC GGCACAAATG AGACTTTTTC TCTGGTAAAT GCAGAGAGCA CCGTTGACAG TATTGTTATG AGCAATAGAA ATGTTCTTAC AGAAACTACA AATGGTAATA AAATAACGTG GAATCCAACT CGTCCAACTT CTGGAAACGA TCAAGAAAAA AATCTTGCGG GTTTTGCTGT TAAGTCAAAG TCCAATTCAT TAACTTTTGA GTCTACAAGT GCTGCTACAA GTGGTAGCCT TTTTGGTGCT TATACTGAAG TGATAAGTCC AGCTCCTGTA AAAGCGGTTG ATCCAGAGCA GGCTCCTGCT AAGGCTGGGG AAGAAATTAC TTACACTGGA ACATTTACTT TACCAAGACA AGGCATTGAT ACTATCGGCA AGATCAAGTC GATGAGTATG GTTGATACGT TTGATGAGCG TCTTGACTAT CAGAGCCTTA GCGTTTCGTT TGATGGACAG ACTCTTACTG AAGGCACCGA TTACACCGTT TCTGTCGATG GTCAAAAGGT GACTGTAGAC ATTGATGCTC ATTTACTTAC CAAAGAAAAT GGCGGTAAAA AGTTTGTCAT TACGTATAAA ACTCTAACTA ATTCAAAGAT AGAGACTGAC AGTTCAAATA TTGATAATGA GCTTACCCAG GTTGTTGACG GTAACATTGC TCACTCTAAT AAAGTAACCA CAGAGCTTCT TTATGAGAAG ACTCATGAGT ACGTTAGTGG CACCCCTAAT AAGGAACTTC CACAAGAGGT TCTGGATTTA CTTCCTGGTA AGCAGACCAG AATTCCAAAC GGCACAACTG TTACACCTGA TCAACCACTT GGTGGAGTAA CTCGTGTTGA AACTTCTGAT GGAACTTGGG TGTTCATTGG TTACGATCAC GATTCTGAGA TTATTGATCA CAAGAACGCA CACTTCATTG GTGTTTGGGT GATTTTGCCT CAGCCAAAGA AGGACGTTCT TGATAGTGAG GGTAATTCTA TTGATGGTAA TAAGGTAACT GCAGGACAAG TACTCACTTA TTCTGTGACA TATACCAATA CCACCAATAC TGCTCGTGAT GTTACGGTTA CTGATGTTAT TCCAGAGCAC ACAACTTACG TTGATAATTC TGCTGATAAC GGTGGAGTTT ATGATAAGGC TACTCGTACT GTAACCTGGA CGAAAAATGT TGCACCTGGT GAGACCCTCA CGGTTACTTT CCAAGTTAAG GTTAATAAGG GCGTTAAGGA TATTACTGTT GTGAATACTG CTCACGTCAG TGATGGTCTC ATTGACACCG ATACTAACAC TACAAAAAAT CCTGTTATAC CTAAGCCACG TAAGTCTCGT GTTCCAAATA CTGGTGACAA CACAATGCGT GATGTAATTA TTGTTGCTGG TTTAGGTGGA ATAGCTCTTC TTATAGTTAT TGTTTTAAAA CTTCGCTCTT CGAGAAAGTA A
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Protein sequence | MKKSFLKRIS VFLTMIMACL VMFVNTAQAF DRQKDDSDLT QINIYQFTMT RDNMTVLSQG DGVKRVEIPA SDTGNLPSTA FVMQPTKDGS NHQYNQPLSL KFSNAGTVDG ESVDVYVTVN SLDLTLKNTN ADYNNPNKTD VPFLTVDENW GTKSFSLMDY IDVNHPSYTA DMLGSYAINA NVTMELRYSD GTPCNLKLVM QPSDIDVLNG GTNETFSLVN AESTVDSIVM SNRNVLTETT NGNKITWNPT RPTSGNDQEK NLAGFAVKSK SNSLTFESTS AATSGSLFGA YTEVISPAPV KAVDPEQAPA KAGEEITYTG TFTLPRQGID TIGKIKSMSM VDTFDERLDY QSLSVSFDGQ TLTEGTDYTV SVDGQKVTVD IDAHLLTKEN GGKKFVITYK TLTNSKIETD SSNIDNELTQ VVDGNIAHSN KVTTELLYEK THEYVSGTPN KELPQEVLDL LPGKQTRIPN GTTVTPDQPL GGVTRVETSD GTWVFIGYDH DSEIIDHKNA HFIGVWVILP QPKKDVLDSE GNSIDGNKVT AGQVLTYSVT YTNTTNTARD VTVTDVIPEH TTYVDNSADN GGVYDKATRT VTWTKNVAPG ETLTVTFQVK VNKGVKDITV VNTAHVSDGL IDTDTNTTKN PVIPKPRKSR VPNTGDNTMR DVIIVAGLGG IALLIVIVLK LRSSRK
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