| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1263 |
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| Symbol | |
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| ID | 8414142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1416740 |
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| End bp | 1419331 |
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| Gene Length | 2592 bp |
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| Protein Length | 863 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 645022855 |
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| Product | Cna B domain protein |
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| Protein accession | YP_003180279 |
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| Protein GI | 257785062 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4932] Predicted outer membrane protein |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAC AGAAGAACAC TTCTATATGG ACATATACTT ATAAGAAGCA GCTGAGAAGG
CTAATATTTT TCCTTACAGT GTGTATGATT GCTTTTGTGG GTCAGTTTGT TGCGGGCGCT
CGTGTTGCCT ATGCAGAAGA CCCTCAGATT AATACTCCAC CGGTACATAA AAAGACCATT
AGTCCTAATA CTGATGGAAC ATATGATTTA ACACTTACCA TCAAAGGTGA AACGTCTGCT
GCTTCGGAAG AGCAAAAGGC AAATGTATTA GTCGTATTTG ATAATTCTTC TAGTATGACA
GCTCAGACTG GTGGCGGTGA AATGCGTCTT GATGCAGCAA AGCGCGTTGT CAATCAGCTT
TCATCAACCA TTTTAGGAAT CAACAGAAAT GCTCAAAAAG ATGTCGTAGA GATGGCTCTT
CTTTCATTCA ATGAAAAGCC AAACTTAGAG TGCGGTTGGA CTGCAGATCT GAATGAATTT
CAAAGAGCAA CAAATAATAT GGGATTTCAC ACTGGCACAA ACTGGGAGAG CGCGTTAGAG
CGTGCAAAAG TTCTTGCTGA TCAAAAAGCA GCAAACGGTA ATCCTACGTA TGTTATTTTT
GTTACTGATG GTCTTCCTAC ACAAGATAGA AATGGCTGGG TACGAAACAA TCAAATCGGT
TATGAGCATG CACTTGATGA AGCTCGTGCT ATTGGCTCAG CAGGATATCA TTTCTACTCA
GTATATATGT ATGGTGGACA TGCCTATTTA AGGCAGTTGA CTAACTATGC ATACACAGGA
AACCCCTTTG GAAATCCTGG TGGAACGTAT TATTATGAAG CAAATAATAC GGCTCAAATG
GAACAAGCTT TTAAAGAAAT CGCTTCTGTT ATTACGAAGT CAATCACTTA TAAAGACGTT
ACCATTAATG ACGGTCTTGA CACTGTAAAT ATGGACTTTG CTGGCAATGG CACCCCTCAA
TACGTACTTA AAAAAATTGC ATCAGATGGT ACTGTTCTTG CAAGCTATGA TTCGACTACC
GGACAAACTG TAGGAACATG GGATTTTGTA AAGCCAACAT TTAATACTGC AAATAAGACA
GTTTCTTGGT CACCTGAACG AGATTCTTCT AAAGTGCTTG AAAATGGTGT GACATATTCC
ATTACTATTA AGACTCAGCC AACACAGGCT GCGTACGATG CTATGGCTGA TGGTACATCA
CTGCATGATG GTGATAATGA CGGCGACGGT ACAAATGATT CTAAAGGCCT ATATTCGAAT
GATAACGATA AGGCAAAAAT TTCTTTTAGG ACTATTTTGA CATCTAAGTC TTCAAATGGC
ACCGTGACTA CAAAAGTGGG CGATCCAACT GAATCACCTT ATAATAAACC TGTTTTTGCG
CCAGTTACAT CACAGCTTAC AATTACAAAG CAGTGGGCCG GTGATGATCA TGATCAAAGC
AATGCCAGTA GACCGTCTGT ACTACGTGGT GTAGTGACTC GCGATGCCGG TACCGCAAAT
GAGAAGAAGT ATGATGTTAC TCTTACAAAA TCGGGTCCTA ATACCTATAC AACAACTTTA
ACTAATGTTC CTGCGGGTCC TACTGGTCAT ACGTATGAAT TTAAAGAAGA GTCACTTCCA
TCGTACTACG AAGCATCTGC AGTAACTGCG TCTGCGCAGG GAAGCTCATC TGCTAACGGA
TCAGTGGTTA CTCTCAAAGG TTCAACTGTA CAAACAGGTT CTTTTGAACT AACAAATACC
TATAAGGCAA AAGGTGAAGT AACTCTAAGT GCATCAAAAG TCTTAAAAGG ACGCAATCTT
GAAGACGGAC AATTTAAGTT CGAGCTTAAA GGACAAGATG ATGCAGTTCA TCAAGAAAAG
ACTAACGATG CAAGTGGTAC TGTAACATTT GACAAGATTG AGTATAAAAC TCCAGGTACA
TATAGATATA CCATTACTGA AAGCCAGGGT GGCGGCACTG GTTATAAAAA TGATACTCAT
ACAGAAAATG TTGTTGTTGA AGTAACGGAT AATGGTGATG GCACACTTAC CGCAACTCCA
AAATATGATG CCGATGGAGC AGTATTTACA AATCAGTACG TGGCCGTACC TCTAGGAGTT
CTTAAGAAAA GTTCAGATGG AGTTACTGCC CTAAGTGGAG CTAGGTTCAC ATTATATGAA
GATGATGGCA ATGGTTCGTA CGGACCAGAG GATAGACCAG CAACTGTATA TAGTGATGAC
GCACTTACTT CTGTAATTTC TAATGGAACA GTAACTACAG ATAATCAAGG TAAGGCACTG
TTCTATGGCT TGGTAGCTGG TAAAACCTAT TGGTTAAGAG AGACTCAGGC ACCAGCAGGA
TATAATCTTG ATACTCAGGC ACACAAGATT ATTGTTAATG CAGACGGTGA TATTTCTACT
GTTAATACTG ATGGTTCAGA GGTTTCTTTA CCTAAGAAAG ATAATGTAGC AACTATTACT
ATTTCTGATG AACCTATACC TGGACTTCCA ACAACTGCAG GTGCGGGTAT TGTAGGTATT
GTTTCTGCTG GCGTAGCGCT TACTGCTGTA GGTGGTGTTG CTTTTGCTAA AAACACTAGA
CGAAGGAAGT AA
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| Protein sequence | MSSQKNTSIW TYTYKKQLRR LIFFLTVCMI AFVGQFVAGA RVAYAEDPQI NTPPVHKKTI
SPNTDGTYDL TLTIKGETSA ASEEQKANVL VVFDNSSSMT AQTGGGEMRL DAAKRVVNQL
SSTILGINRN AQKDVVEMAL LSFNEKPNLE CGWTADLNEF QRATNNMGFH TGTNWESALE
RAKVLADQKA ANGNPTYVIF VTDGLPTQDR NGWVRNNQIG YEHALDEARA IGSAGYHFYS
VYMYGGHAYL RQLTNYAYTG NPFGNPGGTY YYEANNTAQM EQAFKEIASV ITKSITYKDV
TINDGLDTVN MDFAGNGTPQ YVLKKIASDG TVLASYDSTT GQTVGTWDFV KPTFNTANKT
VSWSPERDSS KVLENGVTYS ITIKTQPTQA AYDAMADGTS LHDGDNDGDG TNDSKGLYSN
DNDKAKISFR TILTSKSSNG TVTTKVGDPT ESPYNKPVFA PVTSQLTITK QWAGDDHDQS
NASRPSVLRG VVTRDAGTAN EKKYDVTLTK SGPNTYTTTL TNVPAGPTGH TYEFKEESLP
SYYEASAVTA SAQGSSSANG SVVTLKGSTV QTGSFELTNT YKAKGEVTLS ASKVLKGRNL
EDGQFKFELK GQDDAVHQEK TNDASGTVTF DKIEYKTPGT YRYTITESQG GGTGYKNDTH
TENVVVEVTD NGDGTLTATP KYDADGAVFT NQYVAVPLGV LKKSSDGVTA LSGARFTLYE
DDGNGSYGPE DRPATVYSDD ALTSVISNGT VTTDNQGKAL FYGLVAGKTY WLRETQAPAG
YNLDTQAHKI IVNADGDIST VNTDGSEVSL PKKDNVATIT ISDEPIPGLP TTAGAGIVGI
VSAGVALTAV GGVAFAKNTR RRK
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