| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1261 |
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| Symbol | |
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| ID | 8414140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1414174 |
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| End bp | 1415148 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 645022853 |
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| Product | sortase family protein |
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| Protein accession | YP_003180277 |
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| Protein GI | 257785060 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTAATC CAAAACACAT GATGGCTGTA TTGAAAGCAG GAGAATCAAA CGATTCTCCT
GCTTCTCTTA ATGCCTCGGA TAAAGGTATA GAAAAAAAGA AGCGTGCGCG CGTATGGCTA
ATTATGTCGA TTATTGTTTT GGTTGCTGGT GTTGCGTTAA TTAGCTATCC ATTTGTAAGT
AACTGGCTTA ACCAACTTAC TCAAAATAAT GTGAGTGCTA CCCAAGAAAA TACAGTAGTT
ACAATGTCTA AGACAGACCT TTCTTCTGAA AAGGAAAGGG CAATTGAATT TAATAAGCAC
CTTCGTGATG GTGCTTCTAG GGTTATTGAC CCCTTTGATA GCAAAGAATC TATGCCAGGG
GTTACTGAAT ATAAAGAAGT GCTGAACATA GCAAATGATG GTGTTATGGG AGAGCTTATA
ATACCAAAAA TTTCAGTGAA TCTTCCTATT TATCACTTTA CAACTGATGA TGTGTTACAG
CATGGTGTTG GTCATGTAGT AAATACTTCT GTGCCAATAG GCGGGGAGTC AACGCATACT
GTTTTAGCAG GTCATACCGG TCTGCCTACC GCCCGTATAT TTGATCGACT CAATGAACTT
CAAGCAGGTG ATTGGTTTAT TATTCATGTT CTTGGGGAAG ATCATGCGTA TAGAGTAACT
TCTACTGAAG TAGTTTTACC TAATCAGGTA GATAGTCTTT TTATTGAGCC AGGGAAAGAT
CAAGTAACGC TTGTAACGTG TACTCCTTAT GGTGTTAATA CTCATAGGTT ATTAGTACAT
GCAGAGCGCA CGGATGTTCC TGCCGAATGG AACGATCAAA ATGAGTTGAC TAATCGTTCC
ATTGATTCTT CGGTAGATAT GAGTCGACAC CCAATATTAT TCTCTATTTT GGGTATTGTA
TGTGCTGGTG TAGTTGTCAG TATTGCGGCT TTTATCGCTA AACGTACAAA AGTTTTTTCA
AAAATAAAGA AGTAA
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| Protein sequence | MANPKHMMAV LKAGESNDSP ASLNASDKGI EKKKRARVWL IMSIIVLVAG VALISYPFVS
NWLNQLTQNN VSATQENTVV TMSKTDLSSE KERAIEFNKH LRDGASRVID PFDSKESMPG
VTEYKEVLNI ANDGVMGELI IPKISVNLPI YHFTTDDVLQ HGVGHVVNTS VPIGGESTHT
VLAGHTGLPT ARIFDRLNEL QAGDWFIIHV LGEDHAYRVT STEVVLPNQV DSLFIEPGKD
QVTLVTCTPY GVNTHRLLVH AERTDVPAEW NDQNELTNRS IDSSVDMSRH PILFSILGIV
CAGVVVSIAA FIAKRTKVFS KIKK
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