| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1258 |
|---|
| Symbol | |
|---|
| ID | 8414137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1408035 |
|---|
| End bp | 1412291 |
|---|
| Gene Length | 4257 bp |
|---|
| Protein Length | 1418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 645022850 |
|---|
| Product | LPXTG-motif cell wall anchor domain protein |
|---|
| Protein accession | YP_003180274 |
|---|
| Protein GI | 257785057 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1621] Beta-fructosidases (levanase/invertase) |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACC AACACGATAC ATCATATAAA AAATGGTTTA TGGGAAAAAT TGGTACACAT
AGAATCGCGG GCTGTTTGCT TGCAGCATTA GGTGCATTCA TGTTACAGAT AGGTATTTTT
GGCGTTCAGG AGGCTTTTGC TAATCCAACT TCTACATCGT CACCAGTCGT AGAGGTTCGT
CAGCAAGATA CATCACCAGA TTCTTCTTTA GGTAGTACAG AAAAGTCTGC TCAAACTAAT
CAGACAGTGC ATGTAGACCA AGATGCAGAG GCTAATCAAA CATCCGATGA TGTAAAACAA
ACTTCGGCAG AAGCACAAGA TAAAAATCAA AGTACCGATG AAGTAAAAAA TGACAAGGTA
GATGTTGCAG AGAAAAAAGA AGAAGTGCCA GCTTTATCAT CAGCAGTAGA GTCAGAGAAC
AAAACTGAGG TATCCGCAGT AAGCGCAGAA AATCAATCTG GATTTAAAAC TAATCTTGAA
GATACGCACG GTGATCAAAA TGGAAACTGG GAAGCTCGCG AGGATGGTCT GTATAGCGAC
GCCCGTGGTA AAGGCGACAG TTTCTTTTAT TCTCAAAGTA AAGGCAAGAA CTTTGTATAT
TCAACGGATG TAACGTTTTT GAGTAAAGAG GGTGCCGCAG CACTTGTCTT TAGAAGTAAC
AACGACCCAA ATAACAAGAA TAGCTATGCT GTCAATATTG ATGGAGGAAG TAACAACGTT
AAGTTTTGGC GTTGGCAAGG TGGTCGTGAT TATCAATTTA TTAACGAGAA GCACATCGAG
CCAACAGCAG ATAATACCTA TCACCTAAAA GTAGTGTCTA TAGGCTCTTG GACATCTTAT
TACGTTAATG ATGTGTTAGT TGCAAGTTTA GGCGACTATA CGTTACAAAG AGACGATAAG
GGCCAAAATA CCTATATTTC TGAAGGTTAT TATGGACTTT TGAATTGGAA CAGTCAGGTA
CGTTTTCAAA ATACGTTTTA TAAAGAAATA ACCGAGGAAG AAAGCCCCGA ACTTAAGGAC
ATTACGGTTA CTTCCAAGAC AGGTACAGTA GAACAAAAAG GTCAGTTTAC TTCGCCAGTT
ACTATTCAGT ATGTAAAAAA TAATGCAGCT TCGATTGATT TGAATATCCA ACCAAAGAAT
AGTGCTGCTA AGATTCAAGT TACTGATGCA GCTGGGCATG TATACAGTGA TTTTAAGAAT
ATTCCACTTG CGGTTGGTGC TAATTATTTG ACAGTTACTA GTACTATCAC TACTGATGAT
GGCCAGGATG TTAGCGTAAC TTATAGGTTA AATGTACATC GTAGACAGGC AGATGAAGTT
TACTATAACG AGCTTTATCG AGATCAATAT CACTACTCAG TTAAAGATGG ATGGGCAAAC
GATCCTAACG GATTGGTGTA TTACAAAGGT GTCTATCACT TCTTCTATCA GTTCCACGAT
GACACCAAAT GGGGTCCCAT GCATTGGGGT CATGCAACCA GTACTGATTT AGTTCATTGG
AAAGAACAGC CTATCGCATT TTATCCTGAT GCTAATGGCG CCATGTTCTC TGGCAGTATT
GTTGCTGATC CTAATAACAC TTCCGGCCTT TTTGATAATG GTGAAGGTGG GCTGGTAGCA
CTTATCACAG CAGATGGTAA TGGTCAGCGC ATTAAACTTG CATACAGTAA AGATGAAGGT
AGAACTTGGA CAAAGGTCGA TCAAGTTGCA GCTGACTGGA CAGATGATCC ATTACAGTCC
CAAGACTTCC GCGATCCTAA GGTCTTCCGC TGGCAGAATA AGTGGTTTAT GGTTGTGGCT
GGCGGTCCTT TAAGAATTTA CTCTTCAGAT AATTTACGTA ATTGGAAAGT AGAGTCTACC
TACCCTAATC TACATACTGA GTGTCCAGAT CTTTATCCCA TTAAAGCTAA CGATGGAACC
ATCAAGTGGG TTTTATCGCG CGGCGGTCGT TTCTATAAAG TGGGAGATTT CAAGCAGGTA
GACGGCAAAT GGACGTTCGT TCCAGACGCA GAGTTTGAGC AAGCTGATCA ATCCATGAAT
TTTGGTAAAG ATTCGTATGC AGCGATGACA TATTATGTTC AGGATTTTGG TACTACTGAA
AATCCAACGT TGCCAGAACT TGTTGAAGTT AACTGGATGA ACACCTGGGA TGATTATTGC
AATTTAGTAG CTAATACCGT TGGACAGAAA TTCAACGGAA CATTTAACCT TAATCTTAAA
CTTGGTCTTG TTAAGCAAGA TGGATCGTAT CGTCTGACAC AGACGCCTAT TGATGCATAC
AAGTCTTTGC GTCAAGAGGA TAAGGCTATA ACTCTAAAAG ATGTTGATAT AGACGAGAAA
AGCGATGCGC TTAAGGGTTT CTCGGGAGAT CAGTACGAAA TTGTTTCTAC ATTCCGCCCT
GGTAAAGATA CTAAAAAAGT TGGATTTAAT TTGCGCGTAG GTGGAAATGA AGTAACAAGA
GTCGTATATG ATTTGGAAAC GGAAACGCTC TCCATTGATC GTAGCAAGTC GGGCATTATT
TTGAGCAATA AATTTGCTCA GGTAGACTCC CAGTCAGTAA AGAGAAACGC TGACGGTAGC
ATTGATTTAC ATATCTATGT CGATAGAGCG AGTGTTGAAG TGTTTTCTCG CGGTAATACC
GTGGCGGGGG CCAATCAAAT ATTCCCTGCA CCAAGTAGTC TGGGTGTAAG TGCATTTGCT
GAGGGCGGTA CTGCTAAGGC GGATATAACG CTGTATCCTT TGGCTAGCAC GTGGACGGAT
AAAAAAGAAG CAACAAAGCC GCTTGAGCTG GTACAAGCGT CACCAGTTCA AAATAACGTA
TATGTTGGAG ATACTGTTGA GCTTAAAGCA TACGTAATGC CTTCAACTGT ACCGCAGGAC
GTTGTATGGA GCGTTGATAA TCCTGATTTA GTTTCTGTTA AAGAAGAGGG GAACAAGCTC
TTAGTAACAG CGCTTAAAAA AGGAACCGTT AAAATTACTG CAACATCAAA ATCTGACCCA
ACGTTGTCTA AGGAATTTAC TGTTTCTATT TCTCGTAACG ATTTCAAGAC AAACGTAAAA
GATTTAACGT CTGTGGCTGG AAAATGGTAT GTCGACGGAG AGAGTCTATA CGATAAAAAT
GTGAGCGCCA ATGATTACTA CATGGGAAAA CAGAAGATTC CATTCCCTGA GTATGAGCTT
GATGTTGATA TTAAATATCA AAAAGGTCTC ATCAATATTT TCTATGCATC AGAAAACGTT
GATCCACGTA ATGCGTATTC TGTCCAATTT GGAGACAACG ATGCGGTTCG TTTGTATCGT
TTTATGGGAG ATACTATTGC AGAAGGTAGT ATGAATGGAA AACGTCTTAA TGACGGAAAA
TTCCATCATG TTAAGGTAAT CAAGGGTAAA AACAGCGTAA AAGTTCTTGT CGATGGGGTA
GAGTACCTCA ACCATACATT TGATACTGTA GATTCATACT ACAACAATGC ATATGTTGGC
CTTGGACTAT GGGATGGAGA TCTAGAAGTT CAGAATCTTT TTGTAACTAA CCCTCATGCT
TCTAAGGTAA ATAAAGAGAA TCTTCAAAAA GCGGTTGATA AAGCAAATGA CGTTGATATT
AGTTTGTATA CAGAGGAAAC GGTAAGGGCC TATCAAGAAG CTCTTGCTCA AGCCAAGCAA
GTTTTGGCTA ATGAGAACGT GGAACAGTCA GCAGTTGATG CGGCAGCTCA AAATCTTAAT
GATGTTTTTG GAAAGCTATC AGCAAAGCTT GTATATCAGG TTACCCCTGA TGAAGGTGTA
AAAGAACTTG TGTTTAGTAA GCCAGTCGTG AATATTATTA CTGAAACAAT TCCGTTTAAG
AGACAAGAGC GTACTAATCC AAATCTTAAA CAAGGTTTAC GTCGATTAAT TACTGCAGGA
AAGAACGGTT TACGACGTAT CCTTGTTGAG GTTTCTGGAG ATGATCGCAG GGTAATTGAA
GACAGTACAG TAGACTCAGC TATAGATGAG ATTGTAGAGG TCGGTACGCA AACAGCTTCT
CAGAATGGTA CAAACAATCA ACAAACGGCG CCAAATGATG CTGTGACTAC TAATGAAACA
TCTGCTGTTA ATCAATTAGC ACAAACTACT ACCACAGATA CCTCTACAAA AACTTCTGAT
GGATCACTTC CAAATACAGG TGTTGTAGAT CAAGTTGCTG TTTCGGCAGG ATTAACGTTA
CTGGGTTCGG GATTGGTTGC AGGTAGTCGT AAGAAAAAGA GAGACAAGCT GGACTAG
|
|---|
| Protein sequence | MEDQHDTSYK KWFMGKIGTH RIAGCLLAAL GAFMLQIGIF GVQEAFANPT STSSPVVEVR
QQDTSPDSSL GSTEKSAQTN QTVHVDQDAE ANQTSDDVKQ TSAEAQDKNQ STDEVKNDKV
DVAEKKEEVP ALSSAVESEN KTEVSAVSAE NQSGFKTNLE DTHGDQNGNW EAREDGLYSD
ARGKGDSFFY SQSKGKNFVY STDVTFLSKE GAAALVFRSN NDPNNKNSYA VNIDGGSNNV
KFWRWQGGRD YQFINEKHIE PTADNTYHLK VVSIGSWTSY YVNDVLVASL GDYTLQRDDK
GQNTYISEGY YGLLNWNSQV RFQNTFYKEI TEEESPELKD ITVTSKTGTV EQKGQFTSPV
TIQYVKNNAA SIDLNIQPKN SAAKIQVTDA AGHVYSDFKN IPLAVGANYL TVTSTITTDD
GQDVSVTYRL NVHRRQADEV YYNELYRDQY HYSVKDGWAN DPNGLVYYKG VYHFFYQFHD
DTKWGPMHWG HATSTDLVHW KEQPIAFYPD ANGAMFSGSI VADPNNTSGL FDNGEGGLVA
LITADGNGQR IKLAYSKDEG RTWTKVDQVA ADWTDDPLQS QDFRDPKVFR WQNKWFMVVA
GGPLRIYSSD NLRNWKVEST YPNLHTECPD LYPIKANDGT IKWVLSRGGR FYKVGDFKQV
DGKWTFVPDA EFEQADQSMN FGKDSYAAMT YYVQDFGTTE NPTLPELVEV NWMNTWDDYC
NLVANTVGQK FNGTFNLNLK LGLVKQDGSY RLTQTPIDAY KSLRQEDKAI TLKDVDIDEK
SDALKGFSGD QYEIVSTFRP GKDTKKVGFN LRVGGNEVTR VVYDLETETL SIDRSKSGII
LSNKFAQVDS QSVKRNADGS IDLHIYVDRA SVEVFSRGNT VAGANQIFPA PSSLGVSAFA
EGGTAKADIT LYPLASTWTD KKEATKPLEL VQASPVQNNV YVGDTVELKA YVMPSTVPQD
VVWSVDNPDL VSVKEEGNKL LVTALKKGTV KITATSKSDP TLSKEFTVSI SRNDFKTNVK
DLTSVAGKWY VDGESLYDKN VSANDYYMGK QKIPFPEYEL DVDIKYQKGL INIFYASENV
DPRNAYSVQF GDNDAVRLYR FMGDTIAEGS MNGKRLNDGK FHHVKVIKGK NSVKVLVDGV
EYLNHTFDTV DSYYNNAYVG LGLWDGDLEV QNLFVTNPHA SKVNKENLQK AVDKANDVDI
SLYTEETVRA YQEALAQAKQ VLANENVEQS AVDAAAQNLN DVFGKLSAKL VYQVTPDEGV
KELVFSKPVV NIITETIPFK RQERTNPNLK QGLRRLITAG KNGLRRILVE VSGDDRRVIE
DSTVDSAIDE IVEVGTQTAS QNGTNNQQTA PNDAVTTNET SAVNQLAQTT TTDTSTKTSD
GSLPNTGVVD QVAVSAGLTL LGSGLVAGSR KKKRDKLD
|
|---|
| |