| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1224 |
|---|
| Symbol | |
|---|
| ID | 8414103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 1372648 |
|---|
| End bp | 1375038 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645022818 |
|---|
| Product | N-6 DNA methylase |
|---|
| Protein accession | YP_003180242 |
|---|
| Protein GI | 257785025 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0286] Type I restriction-modification system methyltransferase subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.708606 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAC TCAAATATCA AGAAAAGGAC GGCAAGGTCT ACTGCCCGCT CAAGGACAAG
TGGCTGATTG CCACTCCGGA GGAAAAGGTC AGGCAGCGAT ACGTCTGCAC GCTCGTTAAC
GACTTCGGCT ACCAGCTCGA GCAAATGGCG CAGGAACTCA AGGTCACCAA CTCCAAACGA
GGCCAAGGCA AGGCGCGTGC GGACATCGTC ATCTGGAAGA GTACAGACGA AAAAGACGAG
AGCAAGTCAG CCTTCATCGT AGTCGAATGC AAGGCGGAAA ACGTCAAGAT CCATGTCGAG
GACTATTATC AAGGATTTAA CTACGCGTCT TGGGCGCACG CCCAGTTCTT CGTCACGACG
AACGAGAAGG AAACAAAATA CTTCAACGTC GACCCAACCT ATCTTCCCCA GAAGCTGGAG
GAGGTCGTCG GCATCCCGAC AGCGAAGGAC GTCGATAATG CGAAGAAGAT AGAGCAGATC
AAGAACCGCA CGAAGACCTT CACCCGCGAG GAGTTCACGC GGACGCTTCA GGCATGCCAC
AACATCATCC GAAACAACGA CAAGCTTTCC CCGGAGGCTG CGTTCGACGA GATCAGCAAG
CTGCTATTCA TGAAGATACG CTACGAGCGC CAGCAACGGG GCACTAAGGT GTTCACGAGA
AAACAGTACG AGGCGGAGGA GAAGAACTAC GAGGAAAATA TCCGTCCCGG CCTCAAAGGC
ACAGTTCTCT ACTCACAGTC GTACATGCAG CGCCTTTTCA GCACCACGAA GGAGGAATTC
AAAGACGACC ACCTCTTCGA GGACAGCGAC GAGATCAAGA TCAGGAACAA CAGCTTCATC
CAGATCCTCG GAAAGCTTGA AAACTTCAAC CTATCCGATA CGCAAGACGA TGTGAAGGGC
ATCGCCTTCG AGCAGTTCCT TGGCACGACA TTCAGAGGCG AGTTGGGTCA GTTCTTCACA
CCGCGCACCA TCGTCGATTT CATGACGGAG ATCATCGATC CTCAGGAGGG CGAGATCATC
TGCGATCCGA CATGCGGCTC CGGCGGCTTC CTCATCAAGG CTTTCGAGTA CGTCCGCGAG
AAGATCGAGG CGGACATCCG CGAGCAGAAG GAGAAGCTGC GCTCGGAGTT TGAAAGCGAC
GATTTCGAGA GCAAACCCGA AGACGAGCAG ATCAGAGTCA CCGTCCTTAT CGACAAGATG
CAAGCCGTGC TCAACGCAGA GCTTGATACT AGTGCAACCA ATAGTCGCAT GCAGCAGCTT
TCCCGCAACT GCATCTACGG CACGGACGCC AACCCGCGCA TGGCGCGAAC GTCCAAGATG
AACATGATCA TGCACGGAGA CGGACACGGC GGCGTACACC ACCACGACGG CCTTCTGAAT
GTGAATGGCA TCTTCGAGGA GCGTTTCGAC GTGATTCTCA CCAACCCGCC ATTCGGCCAG
AACGTCGACC GCAGTCAGAC CATCACGGAC GCCGACCGCT TCACCGACGA GGAGATGAAG
AAGAAGTACC GCAACAAGTA CGGCGAGGCA TATGACGAGG CGCTCAAGCA GGTTGACGAC
CATATCGGAA AGCCCTTGCT CTCGCTCTAC GATCTCGGCT CCACGAGCAC CCTCACCGAA
GTGCTCTTCA TGGAGCGCTG CCTGCGCCTT CTCAAGAAGG GCGGACGCAT GGGCATGGTT
CTGCCCGAAG GCGTCCTCAA CAACAAGAAC CTTGCAGCGG TGCGCGAGTA CTTCGAGGGA
AAGGCAAAGC TAATCCTCAT CTGCTCCATC CCGCAGGACG TGTTCATTGC GGCAGGTGCG
ACAGTAAAGC CGAGCCTCGT TTTCATGCGG AAGTTCACCG CCGAAGAAGA AGCAAAGTAC
GCCAAGTGCA AACAGGCCGC AGCAGACGAG GTGGCCGCAC TGCATAAGGA TGAGGTCGAC
GAGCTTGAAA AGGCCATAGC CTACTGCACC GCCGTCACCG AAACGCTCAA GGACGATCTC
AAAGATGCCC GCAGCAGGCT GAAACAGGCC AAGAAGGACA AGGCGAAAAC CTCAAGTATC
AATGCGGAAA TCAATGCCAT CCAGCAAGAG CAGACCGATA ACAAAACAAA GAAGAAGGAG
GTGGAGAAGA CGCTCAAGGA TCTGCAAAAA CGGATGATCG AAGAGGTAAA GCCGCTCATC
AAGAAGAACT TCGACTACGA CATCCCCATC GCAAAGATTG ACGATGCCGG AATCACAACC
ACGGGCGCGG CATCCGAGGG AAACCAACTG CCCGCTCTTG TCGAGGAATA CAAGGCGTAC
CGCAAGGAGC ATGCCCTGTG GGAAACGGAC AATCGGGCAT CCCGGTATAT TCCCATAGAT
GAGGATAGCT TCCAACGAGT CTTTTTCGAG GAAGGCGAGG AGGTGCACTA A
|
|---|
| Protein sequence | MAKLKYQEKD GKVYCPLKDK WLIATPEEKV RQRYVCTLVN DFGYQLEQMA QELKVTNSKR
GQGKARADIV IWKSTDEKDE SKSAFIVVEC KAENVKIHVE DYYQGFNYAS WAHAQFFVTT
NEKETKYFNV DPTYLPQKLE EVVGIPTAKD VDNAKKIEQI KNRTKTFTRE EFTRTLQACH
NIIRNNDKLS PEAAFDEISK LLFMKIRYER QQRGTKVFTR KQYEAEEKNY EENIRPGLKG
TVLYSQSYMQ RLFSTTKEEF KDDHLFEDSD EIKIRNNSFI QILGKLENFN LSDTQDDVKG
IAFEQFLGTT FRGELGQFFT PRTIVDFMTE IIDPQEGEII CDPTCGSGGF LIKAFEYVRE
KIEADIREQK EKLRSEFESD DFESKPEDEQ IRVTVLIDKM QAVLNAELDT SATNSRMQQL
SRNCIYGTDA NPRMARTSKM NMIMHGDGHG GVHHHDGLLN VNGIFEERFD VILTNPPFGQ
NVDRSQTITD ADRFTDEEMK KKYRNKYGEA YDEALKQVDD HIGKPLLSLY DLGSTSTLTE
VLFMERCLRL LKKGGRMGMV LPEGVLNNKN LAAVREYFEG KAKLILICSI PQDVFIAAGA
TVKPSLVFMR KFTAEEEAKY AKCKQAAADE VAALHKDEVD ELEKAIAYCT AVTETLKDDL
KDARSRLKQA KKDKAKTSSI NAEINAIQQE QTDNKTKKKE VEKTLKDLQK RMIEEVKPLI
KKNFDYDIPI AKIDDAGITT TGAASEGNQL PALVEEYKAY RKEHALWETD NRASRYIPID
EDSFQRVFFE EGEEVH
|
|---|
| |