| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1188 |
|---|
| Symbol | |
|---|
| ID | 8414066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1332145 |
|---|
| End bp | 1332624 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 645022782 |
|---|
| Product | transcription elongation factor GreA |
|---|
| Protein accession | YP_003180207 |
|---|
| Protein GI | 257784990 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0782] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01462] transcription elongation factor GreA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00439545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0602948 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACTA CTAAAGAGAT TGTACTTACC CCAGAAGGCC GTCAGAAGCT TGTCGATGAG
CTGGCTTATC GTGAGGGCGA GAAGCACGAC GAGATTGTTG AGCGCATCAA AGAGGCTCGT
GGTTTTGGTG ACCTTTCTGA GAACTCCGAG TATGACGCCG CAAAAGAAGA GCAGTCTCAC
AACGAGTCTC GTATCAACGA GATTCGTCAG ATTCTCTCTG TCGCAAAGGT TGTCGAGGGT
GGCAGTAAGC GCAAGGTTAC CGTTGCAATT GGTACAACCG TCGAGCTTGC TGATGCAAAA
GGCAAGACAA CTAAGTATGT AATTGTTGGT ACTACTGAGA CTAACTCCCT TGAGCACAAG
ATCTCTAACG AGTCACCAGC TGGCGAGGCT CTTATTGGTC ACAAGAAGGG CGACGAGGTT
GAGTTCACTA CGCCAAACGG CAAAGTGAAG AAGTACACCA TTATTTCTAT TACTCGCTAG
|
|---|
| Protein sequence | MDTTKEIVLT PEGRQKLVDE LAYREGEKHD EIVERIKEAR GFGDLSENSE YDAAKEEQSH
NESRINEIRQ ILSVAKVVEG GSKRKVTVAI GTTVELADAK GKTTKYVIVG TTETNSLEHK
ISNESPAGEA LIGHKKGDEV EFTTPNGKVK KYTIISITR
|
|---|
| |