Gene Apar_1178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1178 
Symbol 
ID8414052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1317770 
End bp1318975 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content53% 
IMG OID645022768 
Producttranslation elongation factor Tu 
Protein accessionYP_003180197 
Protein GI257784980 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0050] GTPases - translation elongation factors 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000242479 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000292333 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCCAAGG AAAAGTTTGA CCGCTCTAAG CCACACGTAA ACATCGGTAC GATTGGTCAC 
GTCGACCACG GTAAGACTAC CCTTACTGCA GCAATCACCA AGGTTCTCTC TGAGACCGAG
GGCTGCAAGG CAGACTTTAC CGCCTTCGAG AATATCGATA AGGCTCCAGA GGAGCGTCAG
CGTGGTATTA CCATTTCTGT TGCTCACGTT GAGTATGAGA CATGGAAGCG CCACTACGCT
CACGTTGACT GCCCAGGTCA CGCAGACTAC ATCAAGAACA TGATTTCTGG TGCAGCTCAG
ATGGACGGTG CAATCCTCGT TATTGCTGCT ACCGATGGTC CTATGGCTCA GACCCGCGAG
CACATTCTTC TTGCACGTCA GGTTGGCGTT CCTTACATCA TCGTCTTCCT GAACAAGTGC
GATATGGTTG ACGACGAGGA GCTCATTGAC CTCGTTGAGA TGGAGACCCG TGACCTTCTC
TCCGAGTACG ACTTCCCAGG TGACGATCTT CCAATCGTCC GTGGTTCCGC TCTCGGCGCT
CTTAACGGAG AAGAGAAGTG GATGGATTCC GTCCGCGAGC TCATGCACAC CGTTGATTCT
TACATCCCAA CACCTGCTCG TGACAACGAG AAGCCATTCC TGATGGCAAT CGAGGACGTC
ATGACCATTT CTGGTCGTGG TACCGTTGCT ACCGGCCGTG TTGAGCGCGG TGAGCTTAAG
CTCAATGAGC CTGTTGAGAT TGTTGGTATT AAGCCTACTC AGCAGTCTGT TGCTACTGGC
ATTGAGATGT TCCGTAAGAC CATGGACTTC TGCGAGGCTG GCGACAACGT TGGTATTCTT
CTTCGTGGTG TTAAGCGTGA GGATATCGAG CGCGGTCAGG TTCTCTGCAA GCCTGGTACA
GTTACTCCAC ACAAGAAGTT CACCGGTGAG GTCTACGTTC TTACTAAGGA AGAGGGCGGC
CGTCACACCC CATTCTTCTC TGGTTACCGT CCACAGTTCT ACTTCCGTAC AACTGACGTA
ACTGGCGACA TCTACGAGCT CACCGATGCA AATGGTGGCA AGGTAGAGAT GGCTATGCCT
GGTGACCACA TCACCGTTGG CTGCGAGCTT ATTCACCCAA TCGCTCTTGA GCAGGGTCTG
AAGTTCGCTA TCCGCGAGGG TGGCCACACC GTCGGCGATG GTCGTGTTTC CACCATCATT
GAGTAA
 
Protein sequence
MAKEKFDRSK PHVNIGTIGH VDHGKTTLTA AITKVLSETE GCKADFTAFE NIDKAPEERQ 
RGITISVAHV EYETWKRHYA HVDCPGHADY IKNMISGAAQ MDGAILVIAA TDGPMAQTRE
HILLARQVGV PYIIVFLNKC DMVDDEELID LVEMETRDLL SEYDFPGDDL PIVRGSALGA
LNGEEKWMDS VRELMHTVDS YIPTPARDNE KPFLMAIEDV MTISGRGTVA TGRVERGELK
LNEPVEIVGI KPTQQSVATG IEMFRKTMDF CEAGDNVGIL LRGVKREDIE RGQVLCKPGT
VTPHKKFTGE VYVLTKEEGG RHTPFFSGYR PQFYFRTTDV TGDIYELTDA NGGKVEMAMP
GDHITVGCEL IHPIALEQGL KFAIREGGHT VGDGRVSTII E