| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1170 |
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| Symbol | |
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| ID | 8414043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1309619 |
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| End bp | 1313134 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 645022759 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_003180189 |
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| Protein GI | 257784972 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0809825 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000172992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | GTGTCTACCG CTAAAAAGAC TTCCCTCACC ACGCCTCAGG CGCATACTGG ACGCAGAACG
TTCAGTAAGA TTCCCGCAGC TATGGAGCTG CCAAATCTGA TTACTGTACA GAAGGAATCA
TTTGAGCGCT TTATGGGAGA GGGCCTTGCA GAGTCCTTCG CTGAGTTCTC GCCAATTGAG
AACAGCGCTG GAACCATGCA GGTCACCTTT GGTGACCATC AGTTCGGCGA CCCTGCCAAT
TCAATGGCTG AGTGTCGTGC AAAAGACATT TCATATCAAG CACCTCTCTT TGTTGACGTT
CGTTTTGTCA ACAAAGAGAC TGGTGAGATG AAGGAGCAGC TTGTCTTCAT GGGTGATTTC
CCACTGATGA CTGAGCGTGG TACCTTCATC ATCAACGGTT CTGAGCGCGT TGTGGTTTCT
CAGCTCGTTC GTTCACCTGG CGTGTACTTC TCGTCAGAGA TGGACAACGG TGTTTTGGTT
CACAAGTCTC AGTTCATTCC TGCACGTGGT GCATGGCTTG AGTTTGAGGT TGATAAGCGC
GGCCATTTGG TCGTCTCTAT TGACCGTAAG CGTCGCCAGA GCGCTACTGT CTTCCTCCGT
GCACTCGGCA TTGCTGTTAC CGATGACGAG ATTCTCTCGC TTCTTGGTGA TTCCGATGTT
GTTCGCAACA CACTTGAGCG TGATGTTGCA ACTACACGTG AGGATGCTCT TATCGAGATT
TATCGTCGTC AGCGTCCAGG TGAGCCACCA ACTGTTGACT CTGCCCGTTC TTTGCTTGAC
GGCCTTTTCT TCAACGAGCA GCGCTATGAC CTTGCTCGTG TTGGTCGTTA CAAGATCAAC
AAGAAGCTTG AGGAAGAGAT TCCTGCAGAC GTACGTGTTC TTACCAAAGA GGACATTGTT
GCAGCTCTTC AGTATCTTCT TGCTGTTCAC GCAGGTGATG AGTCTAAGCA CCTTGATGAT
ATTGATCACT TTGGCAACCG CCGCGTTCGT ACTGTTGGTG AGCTGGTCCA GAATCAGTTC
CGTATTGGTA TGAGCCGCAT GGAGCGCGTT GTCCGTGAGC GCATGGCATC TCAGGATGCA
GACGACATCA CTCCACAGTC TCTGATCAAT ATCCGTCCAA TTGTTGCTGC AATCAAGGAG
TTCTTCGGTT CTTCTCAGCT TTCGCAGTTC ATGGACCAGG CAAACCCACT TGCTGGTTTG
ACTCATAAGC GTCGTCTTTC TGCTTTGGGA CCTGGCGGTC TTGCAGGACA CAAGTCCGGT
TCCAGCCGTC GTACCAACGT TCCTACAGCA GTTCGCGACG TTCACAACTC ACACTACTCC
CGTATGTGTC CAATCGAGAC TCCTGAGGGA CCAAACATTG GTCTTATCGG CTCTTTGGCA
CTGTATGCTC ACGTAAATGA GTACGGCTTT ATTGAGGCTC CTTATCGCAA GGTTACAGGC
GGTGTTGTTT CTGACGACAT TGTTTGGATG ACTGCAGATG AGGAGGAGAA TCACATTATT
GCTCCTGCCA ATACTCCAAT TGACCCTAAG ACTAAGAAAT TTGTTGAAGT TGACAAAGAC
GGCAAGATTG TTGACGCAGA CCGCGTTATT GCACGTACCC GCGACTTCGA CGGTTCTTTT
GGTGCTCCTG CACAGGTTCC TGTTGAGGAC GTTGACTACA TGGACGTTTC TCCACGTCAG
CTTCTCTCTG TTGCAGCTAA CCTCATTCCA TTTTTGGAGC ATGACGACGC AAAGCGTACT
CTCATGGGTG CAAACATGCA GCGTCAGGCA GTGCCTCTGA TCCAGTCCCA CGCTCCATTT
GTTGGAACTG GTATGGAGGG TCGTGCAGCT CAGGACTCTG GCGAGCTTAT TTGCGCAGAG
TTTGCAGGCG AGGTCACTGA GGTTGATGCA GCTCATGTTG TCATCTACTC AGATGAGCAC
GGTTCTCAGC GCTACGATCT TCCTAAGTAC GAGCGCTCTA ACCAGTCCAC TTGTATCAAT
CACCGTCCAA TCGTTACCAT GGGTCAGAAG GTCGAGAAGG GCCAACCAAT TGCAGACGGT
CCATCTGTTG ACCACTCTGA GCTGGCACTT GGTGCAAACC TTACCGTTGC TTATATGCCA
TGGGAAGGCT ACAACTACGA GGACGGTATT ATCGTCTCCG AGCGTGTTGT TCAGGAAGAT
CTTTTGACTT CCGTTAACAT TTCCCGCCAC GAGATTGATG CTCGTGACAC CAAGCTTGGC
GCTGAGGAGA TTACCCGAGA GATTCCAAAC CTTGGTGAGG ATATGCTCGC AAATCTTGAC
GATGACGGCA TCATCCGCAT TGGCGCCGAG GTTGGTCCTG GCGATATTCT GGTTGGTAAG
GTCACCCCTA AGGGCGAGAC TGCTCTGACC GCAGAAGAGC GTCTGCTTCG CGCAATCTTT
GGTGCAAAGG CACACGACGT TCGTGATACT TCTCTTAAGA TGCCACACGG CTCTTATGGT
CGTGTTGTTG ACGTTGTTCG CTTCAGCCGT GAGGCTGGAG ATGACCTGCC TCCAGGAGTA
AACGACCTGG TTCGCGTCTT TGTTGCTCAG CGCAGAAAGA TTCAGCAGGG CGATAAGATT
GCTGGTCGTC ACGGTAACAA GGGTGTTATT TGTAAGGTTC TTCCTGTTGA GGACATGCCT
TACATGGCAG ACGGTACCCC AGTAGACGTT ATTCTCGACC CACTGGGTGT TCCTTCTCGT
ATGAATGTTG GTCAGCTGCT TGAGTGCCAC CTTGGTTGGG GCGCTGCACA TGGTTGGGAT
GACGATGACG CAGATTCTAA GCGTTATGTT GAGGGCCCAA TTCCTGTTGC AACACCACTC
TTTGACGGTG CTACTGATGA GTCCGTTGCA GAGATTGTTC GCCGCGCCAA CATCAATATG
ATTAACAAGG CTCTCAAGGA GTACGGCGAG AACATGCGTG AGGAGTTTGT TCCACAGCTC
AACGAGCGTG GTAAGACTAC CCTCTATGAT GGCCGTACCG GTGAGGCATT CAAGAGTCCA
ATTACCGTTG GTGTTTCTTA CATCTTGAAG CTTGGTCACA TGGTTGACGA TAAGATCCAT
GCACGTTCAA CTGGTCCTTA CTCTCTTGTT ACCCAGCAGC CTCTGGGCGG TAAGGCACAG
TTCGGCGGTC AGCGCTTTGG TGAGATGGAG GTTTGGGCAC TGTACGCATA CGGTGCTGCT
AACGTCCTCC AGGAGATTCT TACCGTTAAG TCTGACGATA CCAACGGCCG TGTTAAGACC
TATGAGTCCA TTGTTAAGGG CGAGAATATT CCTACTGCAG GAATTCCTGA GTCCTTCAAG
GTTCTGGTCA AAGAGATTCG CTCCCTGGCA CTTGACATTG AGCCAATCTC TTATCGTAAG
CGTGCAAATA CCGCAAAGGT CACAGATCCT GAGGAGAAGA ACGCTGTTGA GATCCTCAAC
GACCTTGGCT TTACTGAGGT AACCGCTTCC GACCTGTCCC AAGACGCTGA GGGTGCATCC
GCACTTGTAG GCGACGCGAC CACCGATAAG GAGTAG
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| Protein sequence | MSTAKKTSLT TPQAHTGRRT FSKIPAAMEL PNLITVQKES FERFMGEGLA ESFAEFSPIE
NSAGTMQVTF GDHQFGDPAN SMAECRAKDI SYQAPLFVDV RFVNKETGEM KEQLVFMGDF
PLMTERGTFI INGSERVVVS QLVRSPGVYF SSEMDNGVLV HKSQFIPARG AWLEFEVDKR
GHLVVSIDRK RRQSATVFLR ALGIAVTDDE ILSLLGDSDV VRNTLERDVA TTREDALIEI
YRRQRPGEPP TVDSARSLLD GLFFNEQRYD LARVGRYKIN KKLEEEIPAD VRVLTKEDIV
AALQYLLAVH AGDESKHLDD IDHFGNRRVR TVGELVQNQF RIGMSRMERV VRERMASQDA
DDITPQSLIN IRPIVAAIKE FFGSSQLSQF MDQANPLAGL THKRRLSALG PGGLAGHKSG
SSRRTNVPTA VRDVHNSHYS RMCPIETPEG PNIGLIGSLA LYAHVNEYGF IEAPYRKVTG
GVVSDDIVWM TADEEENHII APANTPIDPK TKKFVEVDKD GKIVDADRVI ARTRDFDGSF
GAPAQVPVED VDYMDVSPRQ LLSVAANLIP FLEHDDAKRT LMGANMQRQA VPLIQSHAPF
VGTGMEGRAA QDSGELICAE FAGEVTEVDA AHVVIYSDEH GSQRYDLPKY ERSNQSTCIN
HRPIVTMGQK VEKGQPIADG PSVDHSELAL GANLTVAYMP WEGYNYEDGI IVSERVVQED
LLTSVNISRH EIDARDTKLG AEEITREIPN LGEDMLANLD DDGIIRIGAE VGPGDILVGK
VTPKGETALT AEERLLRAIF GAKAHDVRDT SLKMPHGSYG RVVDVVRFSR EAGDDLPPGV
NDLVRVFVAQ RRKIQQGDKI AGRHGNKGVI CKVLPVEDMP YMADGTPVDV ILDPLGVPSR
MNVGQLLECH LGWGAAHGWD DDDADSKRYV EGPIPVATPL FDGATDESVA EIVRRANINM
INKALKEYGE NMREEFVPQL NERGKTTLYD GRTGEAFKSP ITVGVSYILK LGHMVDDKIH
ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALYAYGAA NVLQEILTVK SDDTNGRVKT
YESIVKGENI PTAGIPESFK VLVKEIRSLA LDIEPISYRK RANTAKVTDP EEKNAVEILN
DLGFTEVTAS DLSQDAEGAS ALVGDATTDK E
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