| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1141 |
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| Symbol | |
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| ID | 8414014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1288173 |
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| End bp | 1289453 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022730 |
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| Product | preprotein translocase, SecY subunit |
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| Protein accession | YP_003180160 |
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| Protein GI | 257784943 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000440606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0147779 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTAAAG GAATCGCCAA CGCATTTCGT ATTCCGGAAC TAAGGGGAAA GATTCTCCTT
ACGGTACTGA TTCTTCTTCT GTACCGTTTT GGTGCATATC TTCCTGTGCC CGGTGCTCCA
TTCCAGCAGA TGCTTTCTGC ATATCAGAAT GGTCTTGCTA AGAATGGTGC AATGGCCGTG
CTTAACCTAT TTTCGGGTGG CGCTCTTTCT CGCATGTCTG TTTTCAGTCT GGGCATTATG
CCTTACATTA CGGCTCAGAT CATCTTCCAG ATGATGCAGT CCGTTATTCC ATCTCTTGGT
GAGCTTGCTA AAGATGGAGA GAGCGGTCAG CGTAAGATTA CGCAGTACAC GCGTAATCTT
ACGGTTGGCT TAGCTCTGCT CAATGCAATT GGATACCTGT TCTTGTTTAA GAGCTATGGT
GTATCTTTTG CATCTATGGA GGGCGTGCCT GAGGCACTTG AAAACTTCCT GGTAGTTTTT
ACCATGCTAG TCGGTGCCAT TATTATTATG TGGCTCGGTG AAGTTATTAC TCAGCAGGGT
GTTGGCAACG GAATGAGTTT GATTATCTTT GCAAACATTA TGGCTGGACT TCCAACAGCC
CTTATCTCTT CAGTAACTAC TCGTGGAAAT ATTGTTCTTA CCGTTGTTAC TGTTGTGGTT
ATGCTCGCTA TTATTCCGCT CATTGTTTAC ATTGAGCGTG GTCAGCGTCG TATTCCTATC
AACTATGCCA AGCGCGTTGT TGGTCGTCGT ATGATGGGTG GTCAGTCAAC TTACCTTCCA
ATTAAGGTAA ATACTGCAGG CGTTGTACCA ATTATCTTTG CATCTGCAAT CCTATATCTT
CCTGCTCAGG TTGCTGTGTT CTTCCCAGGA GTAGAGTGGA TGCAGAAGTT TGCTACTTCA
CTTTCTTCTG GTTGGGTTAA CTGGGTTCTC TCAGTTATAT TCATTGTCTT CTTTGCTTAT
TTCTACACTT CAATGGTGTT CAATCCAGAG GAGACAGCAG ACCAGCTTAA GAAGCAGGGT
GGTTTTATTC CTGGTGTTCG ACCAGGTACT GCCACTTCAA CGTATATCAA GACTGTTATT
GACAGAGTTA CCCTCCCCGG TGCTATCTTT ATGGCAGTTC TTGCAATCGT TCCAACTATT
ATTTTCTGGT TCACAGGCGA TTCGTTGATA CAGGCATTTG GTGGAACTTC TGTCCTGATT
ATGGTCGGTG TTGCAATGGA TACACTCTCT TCCATTGAGT CCCATCTTAA GATGCACAAT
TATGAGGGCT TCTTTAAGTA G
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| Protein sequence | MSKGIANAFR IPELRGKILL TVLILLLYRF GAYLPVPGAP FQQMLSAYQN GLAKNGAMAV
LNLFSGGALS RMSVFSLGIM PYITAQIIFQ MMQSVIPSLG ELAKDGESGQ RKITQYTRNL
TVGLALLNAI GYLFLFKSYG VSFASMEGVP EALENFLVVF TMLVGAIIIM WLGEVITQQG
VGNGMSLIIF ANIMAGLPTA LISSVTTRGN IVLTVVTVVV MLAIIPLIVY IERGQRRIPI
NYAKRVVGRR MMGGQSTYLP IKVNTAGVVP IIFASAILYL PAQVAVFFPG VEWMQKFATS
LSSGWVNWVL SVIFIVFFAY FYTSMVFNPE ETADQLKKQG GFIPGVRPGT ATSTYIKTVI
DRVTLPGAIF MAVLAIVPTI IFWFTGDSLI QAFGGTSVLI MVGVAMDTLS SIESHLKMHN
YEGFFK
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