| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1134 |
|---|
| Symbol | |
|---|
| ID | 8414007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1284692 |
|---|
| End bp | 1285285 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 645022723 |
|---|
| Product | ribosomal protein S4 |
|---|
| Protein accession | YP_003180153 |
|---|
| Protein GI | 257784936 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00609491 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0863667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTG ATAGGACCCC GGTCCTTAAA AGATGTCGTC AGCTTGGCAT CGATCCCGTT
GTGATGGGGA TCAATAAGAC TTCTAACCGT GAGCCACGTC GCCGTCGCCG CCAGGAGAGC
GAGTACGGTA TGCAGCTCCG TGAGAAGCAG AAGGCTAAGT TCATTTACGG CGTCCTTGAG
AACCAGTTCC ACGGCTACTA TGAGATGGCT AAGAAGAACC CAGGCATTAC TGGTGACAAC
TTGATGAGCA TTCTTGAGAC TCGTCTTGAC AATGTCATCT TCCGTCTTGG CTTTGCTCGT
ACACGTAAAG AGGCTCGTCA GACTGTTCGT CACGGTCACA TCACCGTTAA CGGTCAGCGC
GTTGACATTC CTTCATATCG CGTAAAGAGC GGCGATGTTA TCGCCGTTGC TTCCAAGGCA
AAGGATCTTC TCCCCATCAA GGAAGCTCTC ATTTCATCTG AGCACATGGC AGTTCCTGCA
TGGCTTGAGG TTGACATTGA GAAGCTGCAG GGCACTGTTC TTCAGCTTCC AACCCGCGAT
CAGATTGACC TTGAGATTGA CGCACAGCTG ATCGTCGAGC TTTACTCTAA GTAA
|
|---|
| Protein sequence | MAIDRTPVLK RCRQLGIDPV VMGINKTSNR EPRRRRRQES EYGMQLREKQ KAKFIYGVLE
NQFHGYYEMA KKNPGITGDN LMSILETRLD NVIFRLGFAR TRKEARQTVR HGHITVNGQR
VDIPSYRVKS GDVIAVASKA KDLLPIKEAL ISSEHMAVPA WLEVDIEKLQ GTVLQLPTRD
QIDLEIDAQL IVELYSK
|
|---|
| |