| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1133 |
|---|
| Symbol | |
|---|
| ID | 8414006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1283726 |
|---|
| End bp | 1284667 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 645022722 |
|---|
| Product | DNA-directed RNA polymerase, alpha subunit |
|---|
| Protein accession | YP_003180152 |
|---|
| Protein GI | 257784935 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0256815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.177444 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAT TTATCCGACC AAACGTGTCG GTAGATGAAA TCGGCGCAAA CGTCGCTCGT
GTGAGCGTAG AGCCGCTTGA GCGTGGCTAT GGTGACACGC TTGGCAACTC CCTCCGCCGC
GTACTGCTTT CCTCTCTTGA GGGAGCTGCG GTTGAGGCCA TCCAGATTGA TGGCGTTCAG
CATGAGTTCA CTACGGTTGA AGGCGTCTAT GAGGACGTTA CAGATATCGT TCTGAACGTT
AAGGGCCTAG TTTTCCGCAA CACCAACAAC TCTGATGAGG CTGAGGCTTC TATCTCTGTT
GATGGTCCTT GCACAGTCAC TGGTGCTGAT CTTGATGTTC CTATGGGCTA TGAGCTGGTT
AACCCTGCTC AGCACATTTG CGCTCTTGCT GAGGGAGCTC ATCTTTCAAT GAGACTTCGC
ATTGGTAATG GTCGCGGTTA TGTTTCTGGT GAGGATAACG AGCGTGAGAA TGATCCAATT
GGATTTATTC ACGTTGATTC GATTTTCTCG CCTGTTCGTC GCTGCGCTAA GGCTGTTGAG
CCTTGCCGTG TTGGCCGTCA CACCGACTAT GATCGTCTGG TGCTTGAGGT TGAGACCAAT
GGTGCAATCA GCCCTCGTGA GGCTGTTGTT GAGGCTGCAA ACATCATTAA CCAGCACATG
AGCGCATTCA TGGGACTTAC TGATTTTGAT GAGACTCAGG AAGAGGCTTC GATTTTTGCT
AAGGCAGATG TCGAGGATGA TTCCGAGCTT GAGAAGCAGG TTGAGGATTT GGATCTTTCC
GTCCGTTCTT ACAACTGTCT CAAGCGTGCA GGAATTCACT CTGTCCGCCA GCTCGTTGAT
TTCTCTGAGA ACGATCTTCT CAACATCAGA AACTTTGGTG TTAAGTCTAT TGAAGAAGTC
AAGGAAAAGC TCGAGAGCAT GGGCCTGTCC CTTAAGGCTT AG
|
|---|
| Protein sequence | MSEFIRPNVS VDEIGANVAR VSVEPLERGY GDTLGNSLRR VLLSSLEGAA VEAIQIDGVQ
HEFTTVEGVY EDVTDIVLNV KGLVFRNTNN SDEAEASISV DGPCTVTGAD LDVPMGYELV
NPAQHICALA EGAHLSMRLR IGNGRGYVSG EDNERENDPI GFIHVDSIFS PVRRCAKAVE
PCRVGRHTDY DRLVLEVETN GAISPREAVV EAANIINQHM SAFMGLTDFD ETQEEASIFA
KADVEDDSEL EKQVEDLDLS VRSYNCLKRA GIHSVRQLVD FSENDLLNIR NFGVKSIEEV
KEKLESMGLS LKA
|
|---|
| |