| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1131 |
|---|
| Symbol | |
|---|
| ID | 8414004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1281420 |
|---|
| End bp | 1283132 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645022720 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003180150 |
|---|
| Protein GI | 257784933 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1122] ABC-type cobalt transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.844878 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.353633 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAT TTAAAAACGT ATCATTTGCA TACAATGCTT CGGTTGCTAC ACAATCTCTG
GCTGACCCAA CTCTTAAAGA TGCTGTGAAA GCCACTGAGA GCCTTTCTCA GCAAGAGATG
TCACTAACCC TAGATGACGT TTCATTTACA CTAAATCCTG GCTCCAGGAC GGTTGTGCTT
GGACATAATG GCTCGGGCAA GTCAACGCTT GCAAATCTTT GTAATGCATC GCTCTTTCCT
TTATCTGGAG AGATTTTAGT AGACGGTAAC TCAACTGCTA AAGTGCTGTC TACTCAGATT
TCTTCCGTTG TGGGAATGGT TCGTCAAGAT CCAACTGCAC AGCTTGTTTG TGCAACCGTA
TTTGATGAGG TTGCCTTTGG TCCCGCTAAT CTTGGACTGC CTAAAGAAGA TATTGTTTCT
CGCGTTACTC AAACACTTGA GCTCTGTGGC ATTGCTGATT TGGTTGATGC GCCGACACAC
ACTCTTTCTG GAGGTCAACA GCAACTTGTT GCTATTGCGG CAGCACTTTC ACTGCATCCG
AACTATCTGG TGCTTGATGA AGCGTTTTCG CAGCTTGACA CTCGATTTAG AAATCATCTC
TCTAAATTAG TAAATAATCT TGTTGCTAAC GGAATAGGTG TGCTTGAGAT TTCTCATTCA
TTTGAGTCCC TTCCCGGAGC TGACCAGGTA CTTGTTTTGG AGAAAAGTCA CCTTGTGTGG
GCGGGAACTC CTACAGAGTT TCTGTCAGAT GCAAGTGCGA TTACACGCGC TGGTTTTGAC
GATGCACTTA CTGCAACAGC ACATCAAGCG GCGCAGGCTG GTTATGACTT TGATACGCCG
CTTAGTGTCT CAGAGCTTGT TTTGTTTCTT GTCCAAAATA ACCTTGCGTT TGATGCTTTA
GATTCTCTGG TCTATCAGCG CGCGCTTGAG GTGGTACGAG CAAACAACTA TGACGGAATT
CAGGCGCTAG GAGAAGCGCA TGAGCTGGCA ATTTGCGGTG TATCGCATGC ATTTGATAAG
CCAGTCCTAC ATGATGTATC GCTTTCTTCT ATGGGAGAGC TTGTTGTTTT GGTTGGTGCA
TCTGGATCTG GAAAAACAAC CTGCGCTAGA GTAGCGGCAG GCCTTATAAA GGCTGACGCT
GGTCATGCGT CAATCGATGC AAGGTTGGTA AGTCCTGGAG ATGTTGGTAT ATGTTTCCAA
CGACCTCAGG ACCAGCTTTT TGCAAAAAGT GTTGCTGAAG ATATTGCCTT TGGTCCAATT
AACAAGAGTT TCTCGCCAGA TGATGTTGAG AAGCTTGTTG CGTATGCAGC AGAACGTGTT
GGTTTAGATC AGCAAGTCCT GGACGCGTCT CCTCTGACGC TTTCTGGTGG TCAAGCTCGT
CGTGCAGCAC TTGCAGGAAC ACTTGCCTGC GCTACGTATG CGGTGGTGTT TGATGAGGCA
ACGTCTGGAC TTGATGGCAA AGCACGGCTG CAGATGCTTC ATCTTGCTCG TGAGCTGGCA
AATGAGGGAA AGGCGGTTCT TGCAATCACA CATGACGTGA GCGAATGGCT TCCATTTGCC
GACAGAGTAG TATTTCTCGA GAAGGGCTGT GTTGTTGCAA ACGTCAGCGT GCAAGAAGCT
CAGACAAATT CACAGGTCTA TGAAATTGCG CAGCTTGATT GTCCGCTGTT TGTAAGCGTA
TTGCATGAGC TCTTGGAGGC TTGCTATGTC TAA
|
|---|
| Protein sequence | MIEFKNVSFA YNASVATQSL ADPTLKDAVK ATESLSQQEM SLTLDDVSFT LNPGSRTVVL
GHNGSGKSTL ANLCNASLFP LSGEILVDGN STAKVLSTQI SSVVGMVRQD PTAQLVCATV
FDEVAFGPAN LGLPKEDIVS RVTQTLELCG IADLVDAPTH TLSGGQQQLV AIAAALSLHP
NYLVLDEAFS QLDTRFRNHL SKLVNNLVAN GIGVLEISHS FESLPGADQV LVLEKSHLVW
AGTPTEFLSD ASAITRAGFD DALTATAHQA AQAGYDFDTP LSVSELVLFL VQNNLAFDAL
DSLVYQRALE VVRANNYDGI QALGEAHELA ICGVSHAFDK PVLHDVSLSS MGELVVLVGA
SGSGKTTCAR VAAGLIKADA GHASIDARLV SPGDVGICFQ RPQDQLFAKS VAEDIAFGPI
NKSFSPDDVE KLVAYAAERV GLDQQVLDAS PLTLSGGQAR RAALAGTLAC ATYAVVFDEA
TSGLDGKARL QMLHLARELA NEGKAVLAIT HDVSEWLPFA DRVVFLEKGC VVANVSVQEA
QTNSQVYEIA QLDCPLFVSV LHELLEACYV
|
|---|
| |