| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1114 |
|---|
| Symbol | |
|---|
| ID | 8413987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1264362 |
|---|
| End bp | 1265063 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 645022703 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003180133 |
|---|
| Protein GI | 257784916 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTG TTGAATTCAA AGAGGTAACA AAGACGTATA CCATGGGCTC CGTCAAGGTA
CACGCCGTCC ATAACATGAA CTTCTCCATA GAAGAGGGAG AGATTTGCGT AATTGTTGGA
CCATCAGGTG CCGGTAAAAC AACTGTCTTA AATATGCTCG GAGGTATGGA TACCTGTACC
TCCGGGTCTA TTTATTTAGA TGGAAAAGAA ATTGGCGGGC TTTCAGAAAA AGAAAGAACG
CTGTATCGTC GTCATGACAT TGGCTTTGTT TTCCAATTTT ATAACCTTGT CCCCAATCTC
ACAGCAAAAG AAAACGTTGA GCTTGCGTCT CAGATTTGTC TTGATCCTAT GCAGCCAGAA
GATGCACTTC GTGCTGTTGG TCTTGAGCAT CGTATGGATA ACTTCCCAGC TCAGCTCTCT
GGTGGAGAGC AGCAACGCGT TTCTATTGCA CGTGCTTTGG CAAAGAATCC GCGTCTTTTG
CTTTGTGATG AACCAACAGG TGCGCTGGAT TATAAAACAG GAAAGCAAAT TCTTAAGCTC
TTGCAGGATA TGTGCAAAGA GCAGCATAAA ACCGTGGCTA TTGTCACACA TAACTTTGCA
TTTACTCAAA TTGCCGATAG GGTCATTCAT GTTAAAGAGG GTCAGGCTCA ATCGGTTGAA
ATTAATCAGC ACCCAGCCGA TGCACTTACT GTTGAGTGGT AG
|
|---|
| Protein sequence | MSFVEFKEVT KTYTMGSVKV HAVHNMNFSI EEGEICVIVG PSGAGKTTVL NMLGGMDTCT
SGSIYLDGKE IGGLSEKERT LYRRHDIGFV FQFYNLVPNL TAKENVELAS QICLDPMQPE
DALRAVGLEH RMDNFPAQLS GGEQQRVSIA RALAKNPRLL LCDEPTGALD YKTGKQILKL
LQDMCKEQHK TVAIVTHNFA FTQIADRVIH VKEGQAQSVE INQHPADALT VEW
|
|---|
| |