Gene Apar_1071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1071 
Symbol 
ID8413944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1213830 
End bp1214876 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content46% 
IMG OID645022660 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_003180090 
Protein GI257784873 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01123] branched-chain amino acid aminotransferase, group II 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAACT CAGTGGAGAA GAAAGACATC GATTGGACAT CGCTTGGCTT CGCATATACG 
CAGTGTGATT ACAGTTACGT TGCCCACTAC AAAGATGGTG CTTGGGATGA AGGTGGACTT
ACTACCAATC ACAACATTAC GCTGTCTGAA TGCGCAAATA TCTTCCATTA TTGCCAGGAA
GTTTTTGAGG GCTTAAAGGC CTATACCACA GTCTCTGGCG ATATTGTGTG CTTTCGTCCT
AATCTTAATG CTCAGCGTAT GGCAGATTCT GCATCTCGTC TTGTTATGCC TCCATTCCCT
GAGGATAGAT TTGTTGCTGC TGTTAAAGAG GTTGTTTCTG CAAATGCAGC ATGGGTTCCA
CCATTTGGTA CAGGTGCTAC GTTGTATGTT CGTCCTTTTA TGATTGGTAC CGGCAATACC
GTTGGTGTTA AGCCATCTCC TACATATGAA TTCCGCATTA TGGTTACTCC AGTTGGAGCT
TATTACTCTA ACGGCGTTGC TCCTGTTGCA CTGACCGTTT CTCCTTATGA TCGCGCCGCT
CCTCACGGAA CCGGCAACAT CAAGGCTGGT CTGAATTACG CTATGTCTCT GTATCCAACC
ACTTGGGCAC ATGAGCAGGG CTTTGCAGAT AGCATGTATC TTGATTCAGG CTCTCGCACT
TATGTTGAGG AGTCCAGTGG CGCAAACTTC CTCTTTGTTA ATAAAGAGGG AACCTTGGTT
ATTCCACAGT CCTATACTGA TTCTATTTTG CCTTCTATTA CCCGTCGTTC ATTAGCAACT
GTTGCTAAAG ACATGCTTGG TATGAAGGTT GTTGAGCGTC CTGTCCGTTT TGATGAGCTT
GACCAGTTTG TTGAGTGTGG CATGTGCGGT ACTGCTGCCG TTATTTCTCC TGTTGGCAAA
GTTGTTGATG GTGAGAAAGA GATTGTCTTT GGCGCTGGTA TGGAGGCTGT GGGGCCTGTC
ATGTCTAAGC TTCGCAACAC ACTGACCAGC ATTCAGTCTG GTGAGATTGA GGCTCCAGAG
GCGGATTGGA TTTGCAAGAT TTGCTAA
 
Protein sequence
MANSVEKKDI DWTSLGFAYT QCDYSYVAHY KDGAWDEGGL TTNHNITLSE CANIFHYCQE 
VFEGLKAYTT VSGDIVCFRP NLNAQRMADS ASRLVMPPFP EDRFVAAVKE VVSANAAWVP
PFGTGATLYV RPFMIGTGNT VGVKPSPTYE FRIMVTPVGA YYSNGVAPVA LTVSPYDRAA
PHGTGNIKAG LNYAMSLYPT TWAHEQGFAD SMYLDSGSRT YVEESSGANF LFVNKEGTLV
IPQSYTDSIL PSITRRSLAT VAKDMLGMKV VERPVRFDEL DQFVECGMCG TAAVISPVGK
VVDGEKEIVF GAGMEAVGPV MSKLRNTLTS IQSGEIEAPE ADWICKIC