Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_1071 |
Symbol | |
ID | 8413944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1213830 |
End bp | 1214876 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 645022660 |
Product | branched-chain amino acid aminotransferase |
Protein accession | YP_003180090 |
Protein GI | 257784873 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
TIGRFAM ID | [TIGR01123] branched-chain amino acid aminotransferase, group II |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAACT CAGTGGAGAA GAAAGACATC GATTGGACAT CGCTTGGCTT CGCATATACG CAGTGTGATT ACAGTTACGT TGCCCACTAC AAAGATGGTG CTTGGGATGA AGGTGGACTT ACTACCAATC ACAACATTAC GCTGTCTGAA TGCGCAAATA TCTTCCATTA TTGCCAGGAA GTTTTTGAGG GCTTAAAGGC CTATACCACA GTCTCTGGCG ATATTGTGTG CTTTCGTCCT AATCTTAATG CTCAGCGTAT GGCAGATTCT GCATCTCGTC TTGTTATGCC TCCATTCCCT GAGGATAGAT TTGTTGCTGC TGTTAAAGAG GTTGTTTCTG CAAATGCAGC ATGGGTTCCA CCATTTGGTA CAGGTGCTAC GTTGTATGTT CGTCCTTTTA TGATTGGTAC CGGCAATACC GTTGGTGTTA AGCCATCTCC TACATATGAA TTCCGCATTA TGGTTACTCC AGTTGGAGCT TATTACTCTA ACGGCGTTGC TCCTGTTGCA CTGACCGTTT CTCCTTATGA TCGCGCCGCT CCTCACGGAA CCGGCAACAT CAAGGCTGGT CTGAATTACG CTATGTCTCT GTATCCAACC ACTTGGGCAC ATGAGCAGGG CTTTGCAGAT AGCATGTATC TTGATTCAGG CTCTCGCACT TATGTTGAGG AGTCCAGTGG CGCAAACTTC CTCTTTGTTA ATAAAGAGGG AACCTTGGTT ATTCCACAGT CCTATACTGA TTCTATTTTG CCTTCTATTA CCCGTCGTTC ATTAGCAACT GTTGCTAAAG ACATGCTTGG TATGAAGGTT GTTGAGCGTC CTGTCCGTTT TGATGAGCTT GACCAGTTTG TTGAGTGTGG CATGTGCGGT ACTGCTGCCG TTATTTCTCC TGTTGGCAAA GTTGTTGATG GTGAGAAAGA GATTGTCTTT GGCGCTGGTA TGGAGGCTGT GGGGCCTGTC ATGTCTAAGC TTCGCAACAC ACTGACCAGC ATTCAGTCTG GTGAGATTGA GGCTCCAGAG GCGGATTGGA TTTGCAAGAT TTGCTAA
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Protein sequence | MANSVEKKDI DWTSLGFAYT QCDYSYVAHY KDGAWDEGGL TTNHNITLSE CANIFHYCQE VFEGLKAYTT VSGDIVCFRP NLNAQRMADS ASRLVMPPFP EDRFVAAVKE VVSANAAWVP PFGTGATLYV RPFMIGTGNT VGVKPSPTYE FRIMVTPVGA YYSNGVAPVA LTVSPYDRAA PHGTGNIKAG LNYAMSLYPT TWAHEQGFAD SMYLDSGSRT YVEESSGANF LFVNKEGTLV IPQSYTDSIL PSITRRSLAT VAKDMLGMKV VERPVRFDEL DQFVECGMCG TAAVISPVGK VVDGEKEIVF GAGMEAVGPV MSKLRNTLTS IQSGEIEAPE ADWICKIC
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