| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1054 |
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| Symbol | |
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| ID | 8413927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1196709 |
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| End bp | 1199168 |
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| Gene Length | 2460 bp |
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| Protein Length | 819 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022643 |
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| Product | phenylalanyl-tRNA synthetase, beta subunit |
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| Protein accession | YP_003180073 |
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| Protein GI | 257784856 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0072] Phenylalanyl-tRNA synthetase beta subunit |
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| TIGRFAM ID | [TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGTAT CTTATGAATG GCTGAAGACG CTCGTTGATC TTCCTCAGGA TCCAAAAGAC
CTTGAGCGCG AGTTTGTCCG CACAGGCACT GAGGTTGAAG CTGTAGAGCG CGTCGGCGCA
AATCTTGATC ATGTTGTTAC AGCACAGGTT GTGAGCAAAG AGCCACATCC TGATTCTGAT
CACATGTACG TTACCCTGGT TGATGTGGGC AAAAACAATG TAGATAAGGA CGGAAATCCT
GTTCCTCTAC AGATTGTTTG TGGTGCTCAG AATTTTAATC AGGGAGATCA CATTGTTACA
GCAATGATTG GTGCCGTACT TCCTGGTGAC TTTAAGATTA AAAAGTCAAA GTTACGCGGC
GTTGAATCTT ATGGCATGAA CTGTTCTTCT CGCGAGCTGG GTCTTGGTGA TGATCAAAGC
GGCATTATGA TTTTGCCCGA GGATGCTCCT ATTGGCGTGC CTCTTACTGA TTACTTGGGC
ATGTCTGATG TTGTTCTTGA TTGTGAAATT ACTCCTAATC GCCCTGATTG TCTTTCTATG
ACGGGCATGG CTGTTGAGGT TTCTGCAATG TATGACATTG ATACTCACAT TGAGCTTCCA
AGTGTTACAT CTGAGTCTGG TCAGAACGCA TCTGATCAGG TAGATGTTAC TATTACTGAT
CCTGATCTCT GTCCAAGATA TACGGCTCGA GTGGTTCGTA ATGTCAAGAT TGGTCCAAGC
CCTGAGTGGC TTGCTCGTCG CGTTACGGCT TGTGGTGGAC GTTCTATTAA TAATGTTGTT
GACGTTACAA ATTATGTTAT GTATCTGACT GGTCAGCCCT TACATGCTTT TGACTTGGGA
AAACTCACCA AGGAAGACGG TAAGTATCAC ATTGTGGTTC GTGCTGCTAA AGATGGTGAG
CATATTGTGA CGCTTGACGG AGAAGACCGT GAACTCACTT CCGATATGAC GGTCATCACT
GATAACGGTA AGACTCCTAT TGCACTTGCT GGTGTTATGG GTGGTATGGA TTCTGAAATT
ACCGAGAATA CCGTTGATGT TCTTTTAGAG TCTGCGGTTT TTGATAACGG TCACATCAGC
CGTACTAGTA GAAATCTTGA TCTTATGAGC GAGGCTTCTA TTCGCTATGA GCGCCTTGTT
GATCCAAATG GCTGTGCATC TGTTGCGGAC ATTGCAGCGG CCCTCTTTGA GGAGTGTTGT
GGCGCTGAGG TTTGCCCTGG CATTGTTGAT GTGTATCCAA AGGTAAAAGA GGCAGTAACT
ATTGCACTTC GTCCAGAGCG TGTCTGCGCC CTTGCAGGTG TTCAGATTCC AGAAGAGTTT
ATGGTTTCTC GCCTTACACG CCTTGGCTGC AAGGTTACTC CAGCAGATGA TGGCAATTTG
AGCGTTGTTG CCCCAACAAA CCGTCCAGAC CTTACTCGTG AAGTTGACCT TATTGAGGAG
ATTGTTCGCC TGTGGGGCGA AGGTGATATT GAGGCAACGC TTCCTGCTGC TAGAAATCAT
GCTGGCGGAT TGACTTTAGA ACAGCGTCAG ATTAGAAAGA TTGGCCGCAC GCTGCGCTCT
CTTGGTCTTA ACGAGACAAA GTCGTATCTG TTTGCAAGTC CAGATGATCT CTCTAAGCTT
GGTATGAGTG AGGAGGGAAG AGGTGTTCCG GTAAAGGTCA TTAGCCCGCT TGTTGCTGAT
CAGTCAGAGA TGCGTCGATC TATTGTTCCA GGACTTTTAC GCTCTATTGC GTACAATCTT
GCTCACGGTG TCTCTAATAT TGCCATGTAT GAACTGGGTC GCGTGCTCTT TGGACACAAG
GATAAGAGCC AGCCAGATGA GCCTCGTTAT GTCTGTGGCG TGTTAGTTGG CCGTCCAGCA
GATGACACAT GGAATGCCAA GTATCTAGCC TATGATTTCT TTGATGCCAA GGGTATCGTT
GAGGGTCTAC TCGAAGCTTT GCGTATCCCT AAGGTTCGTT TCCGTGTAGC TGAGCCAGAG
CAGTATGGCT GGCTGCAGCC TGGCCGTGCT GCCGAGATTC TTGCAGGTAG CGAGACCATT
GGTTGGGTTG GAAACATTCA TCCTTTGTCA CTGCAGAATT TTGATATTGA GGTTCCAGTA
ATTGCTTTTG AGATTTCTGT TGCATCGCTT TTGCGTCTTT CTCAGAAGGA TCTTCCAATT
GTTGAGCCGC CAACTTACCC AGGTATCTCC ATTGACCTGG CAATTGTTGT TGACGAGAGT
GTCACTGCAG AGCAGCTGGT TCAGCGTTTG AAGTCTGCTG GTGGTAAGCT TCTCTGCGAC
ATCAGACTCT TTGACGTATA TCGCGATGCC CTACGTGTTG GGAAAGGCAA GAAGTCCATG
GCCTTCTCGC TTACGTATCG AGCAGATGAC AGAACGCTTA CTTCAGAAGA GGTCGAGAAG
ACTCACGCAA AGCTTGTGGA GAAGGTTCTT CGTTCTACCG GTGGAGAAAT TCGCGGATAA
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| Protein sequence | MRVSYEWLKT LVDLPQDPKD LEREFVRTGT EVEAVERVGA NLDHVVTAQV VSKEPHPDSD
HMYVTLVDVG KNNVDKDGNP VPLQIVCGAQ NFNQGDHIVT AMIGAVLPGD FKIKKSKLRG
VESYGMNCSS RELGLGDDQS GIMILPEDAP IGVPLTDYLG MSDVVLDCEI TPNRPDCLSM
TGMAVEVSAM YDIDTHIELP SVTSESGQNA SDQVDVTITD PDLCPRYTAR VVRNVKIGPS
PEWLARRVTA CGGRSINNVV DVTNYVMYLT GQPLHAFDLG KLTKEDGKYH IVVRAAKDGE
HIVTLDGEDR ELTSDMTVIT DNGKTPIALA GVMGGMDSEI TENTVDVLLE SAVFDNGHIS
RTSRNLDLMS EASIRYERLV DPNGCASVAD IAAALFEECC GAEVCPGIVD VYPKVKEAVT
IALRPERVCA LAGVQIPEEF MVSRLTRLGC KVTPADDGNL SVVAPTNRPD LTREVDLIEE
IVRLWGEGDI EATLPAARNH AGGLTLEQRQ IRKIGRTLRS LGLNETKSYL FASPDDLSKL
GMSEEGRGVP VKVISPLVAD QSEMRRSIVP GLLRSIAYNL AHGVSNIAMY ELGRVLFGHK
DKSQPDEPRY VCGVLVGRPA DDTWNAKYLA YDFFDAKGIV EGLLEALRIP KVRFRVAEPE
QYGWLQPGRA AEILAGSETI GWVGNIHPLS LQNFDIEVPV IAFEISVASL LRLSQKDLPI
VEPPTYPGIS IDLAIVVDES VTAEQLVQRL KSAGGKLLCD IRLFDVYRDA LRVGKGKKSM
AFSLTYRADD RTLTSEEVEK THAKLVEKVL RSTGGEIRG
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