| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1039 |
|---|
| Symbol | |
|---|
| ID | 8413912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 1173418 |
|---|
| End bp | 1174422 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 645022628 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_003180058 |
|---|
| Protein GI | 257784841 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTT TGTTTTATGG TGCTCAAAGT TACGACAAAG ATTCTTTCAA CCTTGAACTT
CCAAAGTATC CTGATGTTTC AATCGACTAC ATCGAGTCCA ACCTTACACC TATGACCGCG
GGCTTTGCCA AGGGTTACGA CGCTGTCTGT GCTTTTGTCA ACGCAGATGC TTCAATTCTG
ACTCTTGAGA TTCTTGCAGG CTTTGACGTA AAGCTTTTAC TCATGCGTTG TGCTGGATTT
GACGCAGTTG ACGTTAATGC AGCAAAAGAT TTAGGCATTA CCGTAACGCG TGTACCTGCT
TACTCTCCTG AGGCAATTGC AGAGCACGCA ATGGGTCTTG CGCTTGCTGC TAACCGTCGT
ATTCACCGCG GTTATAACCG TATTCGCGAG AACAACTTCT CACTCGTCGG TCTTGTCGGA
GAAACACTGC ATGGTAAAAC CGCAGGTATT GTTGGCACTG GTCGTATCGG TGCTGCACTT
TGCCGCATCT GCAAGGGCTT TGGTATGCAC GTTCTTGGCG CAGATCTCTA CCCAAACATG
AGTCTTGTAA ACGATGAACA TGTCGTTGAT GAATATGTAA GCTATGACGA GCTTTGGGAG
CGCGCTGATT TCATTTCTCT TCATGCATTC TTAAATGAAG AGAGCTATCA CATGATTAAC
GATAAAACTA TCGGCAAGAT GAAAGATGGT GTTGTCCTCG TCAATACCGC ACGTGGTGCC
CTTGTCGATA CCAAGGCTCT TATTCGTGGC ATTCTTTCTG GCAAAATTGG TGCTTGCGGC
CTTGACGTTT ATGAAGAGGA AAATCCAAAC GTCTATAAGG ACCGTGCCGC TGAGGTATTT
GACTCAGTCA CCTCTACTCT CTGTTCATTC CCTAACGTAG TTATGACAAG TCACCAGGCA
TTCTTTACTC ATGAAGCACT CTCTCAAATT GCTCAAGTTA CACTTGATAA TGCAACTGCT
TTTGCTAAGG GCACTGATTA CGTTGATAAA AGTGTGGTTT GCTAA
|
|---|
| Protein sequence | MKILFYGAQS YDKDSFNLEL PKYPDVSIDY IESNLTPMTA GFAKGYDAVC AFVNADASIL
TLEILAGFDV KLLLMRCAGF DAVDVNAAKD LGITVTRVPA YSPEAIAEHA MGLALAANRR
IHRGYNRIRE NNFSLVGLVG ETLHGKTAGI VGTGRIGAAL CRICKGFGMH VLGADLYPNM
SLVNDEHVVD EYVSYDELWE RADFISLHAF LNEESYHMIN DKTIGKMKDG VVLVNTARGA
LVDTKALIRG ILSGKIGACG LDVYEEENPN VYKDRAAEVF DSVTSTLCSF PNVVMTSHQA
FFTHEALSQI AQVTLDNATA FAKGTDYVDK SVVC
|
|---|
| |