| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1036 |
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| Symbol | |
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| ID | 8413909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1168150 |
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| End bp | 1168977 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022625 |
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| Product | SAF domain protein |
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| Protein accession | YP_003180055 |
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| Protein GI | 257784838 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTAAGA AAACAAGAAT TTTAATTTCT GTATTGAGCG CGCTTTTGGC TAGTTTTTGT
TTCTTTGCAT ACGTACAAAG CGTCCGTGCT GAAGCGGAGA AGTCACGAGC AGAGGCAATA
CAAAAATATG GTGGTGAGCT TACCTCAATT TTGGTAGCTA CTAAACAAAT AGAACCCGGA
GAAACCCTCT CATCTTCTAA CACTCAGGTA AAAAGCTGGA TTTCAGATTT GATTCCTGAA
GGCGCAATTA CTAATCCAGA AAGTGTTATG GGTCGTACGG TCTCATCTGT TATTGGAGTT
GGCATGCCTG TTGTATCTCT TCATCTACGA TCGGTTGCTT CTCAGATTAC TATTCCAGAA
AATCTTATCG GTCTCACTAT CTCTCATGGC GAGAAGTACG GATTAGCTGA GAGACTCAGT
GCTGGTACAA AGCTTGCGGC ATATGAGGTT ACTGATTCTC TTATTACCTG TATTGCTTCG
GACATTTCGG TATTGTCAGA CGACGCTGAG GGTACTCTTT ACACTTCTTC TTCAGTAACG
CTCGGATTGA CTCCAGAACA GGTTCCTGCC GTGCTCTCAG CATACGCTCG AGGAACGCTT
CGATTTACTC TTCCTGGATC AAAGATTAAC GCTCAGGACT TACTACACAA CAATTCTTAC
GTTGAAGAAG AGAACCCAAA AGATTTATCT GACACGACGA ATCAATCAAA CTCATCATCT
GCAAGTGAAG ATGTGCAGCC AGAGAACCCT GCTTCTCCAA CAGCCGACCA AGACAGCAAT
AGTGCGCCAC AAGCAGATTC GTCTACTAAT CCAGGGGGTG AAGCGTAA
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| Protein sequence | MTKKTRILIS VLSALLASFC FFAYVQSVRA EAEKSRAEAI QKYGGELTSI LVATKQIEPG
ETLSSSNTQV KSWISDLIPE GAITNPESVM GRTVSSVIGV GMPVVSLHLR SVASQITIPE
NLIGLTISHG EKYGLAERLS AGTKLAAYEV TDSLITCIAS DISVLSDDAE GTLYTSSSVT
LGLTPEQVPA VLSAYARGTL RFTLPGSKIN AQDLLHNNSY VEEENPKDLS DTTNQSNSSS
ASEDVQPENP ASPTADQDSN SAPQADSSTN PGGEA
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