Gene Apar_1004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1004 
Symbol 
ID8413876 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1133795 
End bp1134640 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content43% 
IMG OID645022593 
ProductLicD family protein 
Protein accessionYP_003180024 
Protein GI257784807 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3475] LPS biosynthesis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0988018 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCACAT ACGATACAGA GACACTTAAG CATCTTCAGC AGGTTGAGCT GATGATCTTA 
AAGGACTTCG TTGATACGTG TGAGGCCAAT AACATCCGTT ATTTTGGCTT TGGTGGCACC
GCTATTGGGG CTCTTCGTCA TAAAGGATTT ATTCCCTGGG ATGATGATAT TGATGTCTGC
CTTCCTGCAG AAGACTTCAA TAAGCTCCTA GATATTTATG ACAAAGAGTG GTCAGAAAAG
TATTCAATCA TGAATACCGA GAGGGACATT AACTATCCGT TCCCAACTAC TCGAATCATG
CTCAAGGGTA CACAGTTCTG CGAAGAAGCG CTTGCTCCAC TTCCGCTTGA TCTTGGTATT
TTCTTGGATG TTTACTGCTT TGATAACGTT TCAGATGACG AGAAAGAATA TAAGAAGCAG
GCATTCGATG CGTGGTTCTG GTCGCATATG CGTATCTTGG TTGACGTGCC TCGTCCTGTT
ATTTTGGCCG ACGGCATCAA AGGAAAGCTT TTAAAAGCAG CAGTTACTAT GGGTAGGGGA
GTTTGCAAAC TTCTACATCT CTCTACTCAG AAAATGTATG AACGTGAGCA GGAAGCCCGC
AACCGCTTTG CTCACGTTAA GACAAAAAGA ATTGCCTACC TGCATGATAC TGATAGGTTT
GTAAATACCT ATCCAGTTGA TGAGGTTTTT CCTGTTGATA AGCTTGATTT TGACGGAATT
CAAGTATCGT TCCCTAATCA AAATGATAAG TTCCTCAGGA TGCTTTACGG CGATTACATG
CAGATGCCTC CAGTTGAGAA GCGTAAAAAC CACTATCCAG CGCGTTTGGA TTTTGGTCCT
TACTAA
 
Protein sequence
MRTYDTETLK HLQQVELMIL KDFVDTCEAN NIRYFGFGGT AIGALRHKGF IPWDDDIDVC 
LPAEDFNKLL DIYDKEWSEK YSIMNTERDI NYPFPTTRIM LKGTQFCEEA LAPLPLDLGI
FLDVYCFDNV SDDEKEYKKQ AFDAWFWSHM RILVDVPRPV ILADGIKGKL LKAAVTMGRG
VCKLLHLSTQ KMYEREQEAR NRFAHVKTKR IAYLHDTDRF VNTYPVDEVF PVDKLDFDGI
QVSFPNQNDK FLRMLYGDYM QMPPVEKRKN HYPARLDFGP Y