Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_1004 |
Symbol | |
ID | 8413876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1133795 |
End bp | 1134640 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 645022593 |
Product | LicD family protein |
Protein accession | YP_003180024 |
Protein GI | 257784807 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3475] LPS biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0988018 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCACAT ACGATACAGA GACACTTAAG CATCTTCAGC AGGTTGAGCT GATGATCTTA AAGGACTTCG TTGATACGTG TGAGGCCAAT AACATCCGTT ATTTTGGCTT TGGTGGCACC GCTATTGGGG CTCTTCGTCA TAAAGGATTT ATTCCCTGGG ATGATGATAT TGATGTCTGC CTTCCTGCAG AAGACTTCAA TAAGCTCCTA GATATTTATG ACAAAGAGTG GTCAGAAAAG TATTCAATCA TGAATACCGA GAGGGACATT AACTATCCGT TCCCAACTAC TCGAATCATG CTCAAGGGTA CACAGTTCTG CGAAGAAGCG CTTGCTCCAC TTCCGCTTGA TCTTGGTATT TTCTTGGATG TTTACTGCTT TGATAACGTT TCAGATGACG AGAAAGAATA TAAGAAGCAG GCATTCGATG CGTGGTTCTG GTCGCATATG CGTATCTTGG TTGACGTGCC TCGTCCTGTT ATTTTGGCCG ACGGCATCAA AGGAAAGCTT TTAAAAGCAG CAGTTACTAT GGGTAGGGGA GTTTGCAAAC TTCTACATCT CTCTACTCAG AAAATGTATG AACGTGAGCA GGAAGCCCGC AACCGCTTTG CTCACGTTAA GACAAAAAGA ATTGCCTACC TGCATGATAC TGATAGGTTT GTAAATACCT ATCCAGTTGA TGAGGTTTTT CCTGTTGATA AGCTTGATTT TGACGGAATT CAAGTATCGT TCCCTAATCA AAATGATAAG TTCCTCAGGA TGCTTTACGG CGATTACATG CAGATGCCTC CAGTTGAGAA GCGTAAAAAC CACTATCCAG CGCGTTTGGA TTTTGGTCCT TACTAA
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Protein sequence | MRTYDTETLK HLQQVELMIL KDFVDTCEAN NIRYFGFGGT AIGALRHKGF IPWDDDIDVC LPAEDFNKLL DIYDKEWSEK YSIMNTERDI NYPFPTTRIM LKGTQFCEEA LAPLPLDLGI FLDVYCFDNV SDDEKEYKKQ AFDAWFWSHM RILVDVPRPV ILADGIKGKL LKAAVTMGRG VCKLLHLSTQ KMYEREQEAR NRFAHVKTKR IAYLHDTDRF VNTYPVDEVF PVDKLDFDGI QVSFPNQNDK FLRMLYGDYM QMPPVEKRKN HYPARLDFGP Y
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