| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0996 |
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| Symbol | |
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| ID | 8413868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1125847 |
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| End bp | 1126452 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 645022585 |
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| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
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| Protein accession | YP_003180016 |
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| Protein GI | 257784799 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
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| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGTTTC CAAAAGAGCT TAAAAACCCT ATTCAATCGG GCAATTTTAC GTTTTATGAC
ACCTCGATTG AAGGTGTAAA GGTTGTGGAT GTAAAGCTGT ACGGTGATGC TCGCGGTGGC
TTTATGGAGA CCTATCGTGA AGAAAACTTT GTTGCTGGCG GCATCGGCGC TTCATTTGTA
CAGGACAATC AGTCTTATTC CGTTCAGGGT GTGCTTCGTG GCCTTCATTT CCAGATTGAG
CATCCACAGG CAAAGCTTGT CCGTGTCATC TCTGGCACTG TTTTTGACGT TGCTGTTGAT
CTGCGAGAGG GAAGTCCAAC CTGGGGTCAG TGGGAGGGTG TCATCCTTTC CGCTGAGAAC
CGCAGACAGT TTTTTGTTCC ACGCGGCTTT GCCCACGGTT TCTTGGTGCT CTCTGAGACT
GCTGAGTTCT GTTACAAGTG TGACGACATC TATCATCCAG GTGACGAGGG TGGCATTATG
TGGAACGATC CAGAGCTTGG TGTAGAGTGG CCAGCATTTC TTGGTGAGAA GAACTTAGAT
CCTGCAAAGG TTATTCTTTC CGACAAAGAC AAGATTCATC CAGCACTTTC TACACTTAAG
AAGTAG
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| Protein sequence | MEFPKELKNP IQSGNFTFYD TSIEGVKVVD VKLYGDARGG FMETYREENF VAGGIGASFV
QDNQSYSVQG VLRGLHFQIE HPQAKLVRVI SGTVFDVAVD LREGSPTWGQ WEGVILSAEN
RRQFFVPRGF AHGFLVLSET AEFCYKCDDI YHPGDEGGIM WNDPELGVEW PAFLGEKNLD
PAKVILSDKD KIHPALSTLK K
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