| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0984 |
|---|
| Symbol | |
|---|
| ID | 8413856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1110955 |
|---|
| End bp | 1111887 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 645022573 |
|---|
| Product | extracellular solute-binding protein family 3 |
|---|
| Protein accession | YP_003180004 |
|---|
| Protein GI | 257784787 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCG TTAAAAGCTC TCTTAAGGTG TTGCTTCTTA TGGCACTTGC TGTTGTTTTA
ACAGGATGCT CCATTGGTCC CATCAACATT GATTTGGATA AATGGTTCCA CGTCAAGTCA
GTGCAGGAAG CAATCCAAGA GAAGCGAGAA GCTCGTCAGC AGAAGGTTCC TGATTCTTCG
TTACACACAG CTGGTACTCT TACGGTTGGC CTGCGTACTC AGTCAGTAAC TGCTCCAATG
ATTGCTGCTT CAGAAGGCGG AATGCTTCAG GGGATTGACG TTGAAGTAGC TTCTGCGATT
GCAGATCAAC TGGGTGTAGA TGTTAAGTTT GTGTCAGTTA ATGGGCCAGT AGATGGCCTA
CAAGCGGGCT GTGACATTGT AATGGATGTC AGAAGTGGTG AAGATTCATC AAGTACGTTG
ATTTCTGGGT ACGCTGAGTC TACAACAGCT CTTTTCCATA AGGGTTCAGA AACAGACATC
ACTGCAGATA ATTTGAGTGG AAAGTCCGTT GGAGTTCAAA GTGGCTCTTT GTCTGAGCGA
GCAATGGGTC AGGTGCTTAC TGGCATGTCT GTTCAGGGTT TTTCTAACCT AAACGAAGCT
TTTGAGGCAC TTGAAAATGG TTCTATCGAT TATGTGGCTT GTGATGCATA TGCTGGTGCT
TATCTAGCGG CAAATAAAGA TATTTCTATG GTTGGTGTTG TAGACGTTCC AACTACGGTT
GGGATTTCTG TGGCAACAAG TAATAAAACT CTTGCTACGC AAATTCAGCA AGCGCTTTCA
TCTATTCAAT CTAACGGCGT CGAGGGCGTC ATTAGAAATA AATGGGTTGG TACATTGCCA
CACCTCTCAA CTACCAATAA GATTTCTGGT CTTGTAGAAG TATCTACTCA GTCAACCAGC
ACTGATTCAT CTGCATCTTC TGAGCAAAAT TAG
|
|---|
| Protein sequence | MTRVKSSLKV LLLMALAVVL TGCSIGPINI DLDKWFHVKS VQEAIQEKRE ARQQKVPDSS
LHTAGTLTVG LRTQSVTAPM IAASEGGMLQ GIDVEVASAI ADQLGVDVKF VSVNGPVDGL
QAGCDIVMDV RSGEDSSSTL ISGYAESTTA LFHKGSETDI TADNLSGKSV GVQSGSLSER
AMGQVLTGMS VQGFSNLNEA FEALENGSID YVACDAYAGA YLAANKDISM VGVVDVPTTV
GISVATSNKT LATQIQQALS SIQSNGVEGV IRNKWVGTLP HLSTTNKISG LVEVSTQSTS
TDSSASSEQN
|
|---|
| |