Gene Apar_0981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0981 
Symbol 
ID8413853 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1108069 
End bp1109133 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content48% 
IMG OID645022570 
Product3-hydroxyisobutyrate dehydrogenase 
Protein accessionYP_003180001 
Protein GI257784784 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTGA GCAAAAATGC AAAGGTTGCT TTTATTGGAA CAGGTATTAT GGGCGCTCCT 
ATTGCAGAGC ACCTTATTTC TGCTGGTTAT GACGTTACTG TTTATAACAG AACACCAGAA
AAAGTCCAAA GGCTTGTCTC TTTGGGTGCT CATGCTGCGG AGAGCGTAAC AGATGCCGTA
AAAGATGCTG ACGTTGTCTT TACCATGGTT GGTTATCCAA CTGATGTTGA AGACGTTTAT
TTAACAACAG ATGGTCTTAT TCGCGTTGCT AAGAAAGGTG CATACCTTAT TGACCTCACC
ACTTCTTCAT CTCAGCTTGC GCGTGATATT CACGATGCTG CTGAGATTGA GGGAAAACAT
GCGTTTGACT GCCCCGTTAC TGGAGGTCAG AAGGGAGCTC AAGACGGTAC TCTTACGTTG
ATTATTGGTG CAACTGAGAA TGACATTGAG CCAGTTCGCG CACTTCTCGA GACCTTCTCA
TCAAAGATTT TCTGTATGGG CGGTGCTGGT AAGGGTCAGA CTGCAAAGCT CTGTAATCAG
GTATCTCTTG CTTCCTGCAT GATTGGCTAT GCTGACGCAA TGGCTTTGGC AGAGCAGGGC
GGACTTGATG TTGAGCAAAT GCTTGAGGTT GTTGCAAGTG GCATGGGTTC TTCTCGTGCA
CTTAAAGAGC TTGCTCCTAA ATCGCTTGAG GGAGATTTCC AGCCAGGATT TTTGGCTGAG
CACTTCCGCA AGGATATTGC GCTTGCTCTT GCTCAGTCTG AGGATCTTGA GATTACGCTT
CCTGGTGCAG AGACTGCATT TACTTTGTAT GACATGCTGT GTCAGATTGG TGGTGCTCGT
AAGGGTACTC AGGCAATCTC GTTGCTTTAT GCTGATGAGG CAACTAGTAC TGCAGCTGGC
CTTGATTGGT CACTTCTTGA GGACCAGGAA GATGAGGGTG AACACGAATG CTGCTGCGGT
CACGATCATG AAGATGGCAA TCACGAGTGC GAGTGCCACG GCCACGGACA TCATCATGAC
CACGAAGGTC ATGAGCACGG CCATGATGAA CACTGTTGTC ATTAG
 
Protein sequence
MALSKNAKVA FIGTGIMGAP IAEHLISAGY DVTVYNRTPE KVQRLVSLGA HAAESVTDAV 
KDADVVFTMV GYPTDVEDVY LTTDGLIRVA KKGAYLIDLT TSSSQLARDI HDAAEIEGKH
AFDCPVTGGQ KGAQDGTLTL IIGATENDIE PVRALLETFS SKIFCMGGAG KGQTAKLCNQ
VSLASCMIGY ADAMALAEQG GLDVEQMLEV VASGMGSSRA LKELAPKSLE GDFQPGFLAE
HFRKDIALAL AQSEDLEITL PGAETAFTLY DMLCQIGGAR KGTQAISLLY ADEATSTAAG
LDWSLLEDQE DEGEHECCCG HDHEDGNHEC ECHGHGHHHD HEGHEHGHDE HCCH