| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0960 |
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| Symbol | |
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| ID | 8413831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1081093 |
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| End bp | 1082736 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022548 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_003179980 |
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| Protein GI | 257784763 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGAGA ACTCACTTAG CCGTCGTAAT TTTTTGAAGG CATCAGGTAT GGTAGCGGCT
GGTGGTGGCG CATCTATGAT GTTGGCTGGC TGCAACTCTT CTACTGATAC TCCTCAGGCA
TCCGATAAGA AAAAGATTCT TCGTTATGGT TCTGCAAACT CTAAGCAAGG TCTTGATATG
CAGCGTGCTA ATAACTCACA GTCCGCATGC GTTGCAGATT CTGTATGTGA GTCTTTGCTT
CGTTGGACTG AGGATAACGA GCTTGTTCCA TGTCTACTCA AAGAGACTCC AACCTTTGAG
TCTGATGGTG TTACTCTTAA GTGCGAGCTT AAAGAGGGTA TCAAGTTTCA CGATGGTACT
ACTTTGACCG CAAAGGATGT TAAGTACACC TTTGAGCGTA TGTTTAAGCC AGAGACTAAG
GCTCTCTCCA CCAGCTTCTT TGACAAGATC AAGGGAGCTC CAGAGATGCT TGCCGGTAAG
ACAACTGAGC TTGAGGGCCT GACTGTTCAG GATGATACTC ACTTCACCTT TACACTTTCT
GAGCCTTACA TTGTTTTTGT AAGCGTTCTT GGAATCTCCT ATGCCTGCAT TTTCCCAGAG
AAGGCATGCG AGGCTGCTGG TACTGATTGG GGTACTGGTA CTAACCTCAT TGGTACTGGT
AAGTACAAGA TTAAGAGCAA CGATGACACC ACTGAGGTAG TTCTTGAGCG TTTTGATGAC
TATCACGATG GCAAGCCTGC TCTGGATGAG ATTCGTATCC ACTACTACGA TGATTCCAAC
ACTCAGTTAC TTGCATTTAA AAACAACGAT ATTGACTTCT GCGATCTTCC ATCTTCTTTG
TATCAGCAAT ATTCAAGCGA TGCTGACGTT AAGGATCTTA TTACTGCATA TCAGACCCTT
GGTGTTAACT TCATCAACCT CAACCTCAAA GAGGGCTTTG AGCTTACCGA TCCTAAGGTT
CGCCAGGCGC TTTCCTTGGC AATTAACCGC CAGGAGCTTG TTGACAACAT TGCTTCAGGT
AATGGTACCG TTGCAAGCGG CTGGCTTGCA CCATCAACTC CTGGTTATGA TAAGAGTGCT
CCTGCTTTTG AGTACAATCC AGAGAAGGCT AAGTCTCTTC TTGCTGAGGC TGGTGTCACT
GACCTTAAGC TTTCTGCAAA GGTTAGAAAA TCTTACGAGA AGCTCCTTGT TGCCGTTCAG
GAGTACTGGA ACAAGATTGG TGTTACCCTT GATGTTCAGG TAGAGGACAA CGCAGTTTGG
AATACTGACT GGGCTGCTGG TAACCTTCAG ATTACTACTC TTGGTTGGTA TCCACTGTTT
GCTGATGGCG ATCAGCACCT TTACACCTAC TTCTACAGCA CTAATGCTGC AAAGAAGTCT
TCCTTCTATA ATAGTTCCGA GTTTGACAAG CTTCTTGTTG AGGGTCGCTC TGAGTCTAAC
AAGGATAAGA GAACAGAGGA TTACAAAGAC GCAGACAATC TGTTGACCCG TACAGACTTT
GCGACACTTC CTCTGTACTG GCCAAAGAAT TCCTTTGTCG CTAAGAAGTA CGTCAAGAAC
GCTAAGGTTG GAAACTTGAT TTATCACTTC TTTGATATTG ATATTGATAC ATCTAATTCC
GATTACACCG TTCCAGAAGA CTAA
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| Protein sequence | MLENSLSRRN FLKASGMVAA GGGASMMLAG CNSSTDTPQA SDKKKILRYG SANSKQGLDM
QRANNSQSAC VADSVCESLL RWTEDNELVP CLLKETPTFE SDGVTLKCEL KEGIKFHDGT
TLTAKDVKYT FERMFKPETK ALSTSFFDKI KGAPEMLAGK TTELEGLTVQ DDTHFTFTLS
EPYIVFVSVL GISYACIFPE KACEAAGTDW GTGTNLIGTG KYKIKSNDDT TEVVLERFDD
YHDGKPALDE IRIHYYDDSN TQLLAFKNND IDFCDLPSSL YQQYSSDADV KDLITAYQTL
GVNFINLNLK EGFELTDPKV RQALSLAINR QELVDNIASG NGTVASGWLA PSTPGYDKSA
PAFEYNPEKA KSLLAEAGVT DLKLSAKVRK SYEKLLVAVQ EYWNKIGVTL DVQVEDNAVW
NTDWAAGNLQ ITTLGWYPLF ADGDQHLYTY FYSTNAAKKS SFYNSSEFDK LLVEGRSESN
KDKRTEDYKD ADNLLTRTDF ATLPLYWPKN SFVAKKYVKN AKVGNLIYHF FDIDIDTSNS
DYTVPED
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