| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0946 |
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| Symbol | |
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| ID | 8413817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1063910 |
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| End bp | 1066150 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 645022534 |
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| Product | excinuclease ABC, B subunit |
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| Protein accession | YP_003179966 |
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| Protein GI | 257784749 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
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| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCAT CTCATGCTGA AGATCAACAT AAAGAGTATA TAGGCGCTGA GCTGCGTCGA
TTTGGTCGTG AAGCAGGAGA AGAGAAGCTT CAGGTAGTAT CTCCTTTTGA GCCAGCAGGT
GATCAGCCGC AGGCAATAGA AAAGTTGGCT CAAGGAATTG AAGATGGGCT TAGGTATCAG
ACACTCTTAG GTGTTACGGG CTCAGGTAAG ACTTTCTCTA TGGCTAAGAC TATCGAGAAA
CTCAATCGCC CCACGCTTAT TATGGAACCT AATAAAACGC TGGCCGCTCA GGTTGCTTCA
GAGATGAAGG AACTGTTTCC TAACAATGCT GTTGTGTACT TTGTCTCATA TTATGATTAT
TACCAGCCAG AAGCGTATGT TCCGCAGTCA GATACGTATA TAGAAAAAGA TGCTTCCATT
AATGAAGAGG TAGAGAAGCT CCGTCACCAG GCAACTTCGT CTCTTTTGTC CAGGCGTGAT
GTCATTGTTG TTGCATCTGT ATCGTGTATT TACGGTATTG GTAGTCCACA AGATTATGCT
GGTCTTGCTC CTAATGTAGA TAAATCTGTT CCTCTTGAGC GCGATGATTT TATTAAAGAT
CTTATTAATG TTCAGTACGA TAGAAATGAT TATGACTTGC AGCGTGGCAT GTTTAGGGTT
CGTGGAGACG TTGTTGATGT ATTTCCGCCA TATGCAGAAA ATCCGTTGCG TATTGAGTTT
TTTGGTGACG AAGTAGAAAG CATTTCAGAG GTTAGTACTG TAACAGGCGA GGTGCTTAGA
GAGTTTGACG CTATCCCAAT TTGGCCAGCT TCTCACTATG TTACTGAGCG CCCAAAGATT
ACTCATGCTC TTACAACCAT CTCTGAAGAG ATGGAAGCTC GTGTTAAAGA GCTTAAAGAA
AACGATAAAC TATTAGAAGC CCAACGTCTT GCTCAGAGAA CAAACTATGA TTTAGAGATG
CTTGAGACCA TGGGTTACTG CAATGGTATT GAGAACTATT CCCGCCATTT GGACGGCCGT
GCTCCAGGTG AGCCTCCTTA TACACTCATT GACTATTTCC CTAAAGATAT GATTTGCATT
ATCGATGAGT CACACGTTAC TGTTCCTCAA ATTAGAGGTA TGTATGAGGG TGATAGATCT
CGTAAAGTTA CGCTGGTAGA TCATGGATTT AGACTTCCTT CTGCGCTTGA CAACAGACCA
CTCAGATTTG ATGAGTTTGA AGGACGTATC CCTCAGTTTA TTTACGTATC TGCAACTCCT
GGAGACTATG AAGAGACAGT GGCTCAGCAA CAAGTTGAGC AGATCATCCG TCCAACTGGT
CTTTTGGATC CAAAGATTGA TGTCAGGCCA GTAAGAGGTC AGATTGACGA TCTTATTTCA
GAGGTTAAAG AGCGTGTGGC AAAAAAAGAA CGCGTTCTTG TTACTACACT TACTAAACGT
ATGGCAGAAG ACCTTACAGA TCACCTGTTA GATGAGGGTA TTAAAGTCAA CTATATGCAC
TCAGATACTG CCACACTTGA CCGTGTAGAA ATCATTAGAG ATTTGCGTCA GGGTAAGATT
GACGTACTGG TTGGAATTAA CCTTTTACGA GAAGGACTTG ATATTCCTGA GGTTTCTCTT
GTTGCTATTC TTGATGCAGA TAAAGAAGGC TTCTTAAGAA ATAGAAGATC TCTCATTCAG
ACTATGGGTA GAGCAGCAAG AAATGCTTCT GGTCAGGTTA TTATGTACGC CGATAAAATT
ACCGATTCCA TGCGTATTGC TATTGATGAG ACAAAAAGGC GTCGAGAGCT TCAGGAAGCA
TTTAACAAAG AGCATGGTAT TGTGCCTAAA ACTGTTAAGA AATCTATTAC TGATATTGCA
GGCTTTATCG CTGAAGCCTC AGAGAATATT GATAAGCGTA AGCGCAAAAA TGGAGAGTTT
TATACCGCTT CCAATGATGA AGATTCGCTT GAGGAACAGC AAGAATCAAT TCTTGAGATG
CCTGCAGAGT TGCTTACTGA AGAGCTTCAA AATCTCCCTC GTTCAGAAGT TGAAGCTATG
CTTTCTGGTA TGGAAGCAGA GATGGCAGAA GCTTCTGCGT CTATGGATTA TGAGCACGCG
GCAGAACTCA GAGACCAGAT TGTTGCCATC AGAAGCCAGC TTGAGGGTAC TACCTCAGAT
GATGTTATTA AAAGGCTTAA GACAGGTGCT AGAAAGGGTA GCGCACACGC TACTCGTAGA
CGCTATCGAG GTAAGCATTA G
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| Protein sequence | MDSSHAEDQH KEYIGAELRR FGREAGEEKL QVVSPFEPAG DQPQAIEKLA QGIEDGLRYQ
TLLGVTGSGK TFSMAKTIEK LNRPTLIMEP NKTLAAQVAS EMKELFPNNA VVYFVSYYDY
YQPEAYVPQS DTYIEKDASI NEEVEKLRHQ ATSSLLSRRD VIVVASVSCI YGIGSPQDYA
GLAPNVDKSV PLERDDFIKD LINVQYDRND YDLQRGMFRV RGDVVDVFPP YAENPLRIEF
FGDEVESISE VSTVTGEVLR EFDAIPIWPA SHYVTERPKI THALTTISEE MEARVKELKE
NDKLLEAQRL AQRTNYDLEM LETMGYCNGI ENYSRHLDGR APGEPPYTLI DYFPKDMICI
IDESHVTVPQ IRGMYEGDRS RKVTLVDHGF RLPSALDNRP LRFDEFEGRI PQFIYVSATP
GDYEETVAQQ QVEQIIRPTG LLDPKIDVRP VRGQIDDLIS EVKERVAKKE RVLVTTLTKR
MAEDLTDHLL DEGIKVNYMH SDTATLDRVE IIRDLRQGKI DVLVGINLLR EGLDIPEVSL
VAILDADKEG FLRNRRSLIQ TMGRAARNAS GQVIMYADKI TDSMRIAIDE TKRRRELQEA
FNKEHGIVPK TVKKSITDIA GFIAEASENI DKRKRKNGEF YTASNDEDSL EEQQESILEM
PAELLTEELQ NLPRSEVEAM LSGMEAEMAE ASASMDYEHA AELRDQIVAI RSQLEGTTSD
DVIKRLKTGA RKGSAHATRR RYRGKH
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