| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0938 |
|---|
| Symbol | |
|---|
| ID | 8413809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1052258 |
|---|
| End bp | 1054192 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022526 |
|---|
| Product | excinuclease ABC, C subunit |
|---|
| Protein accession | YP_003179958 |
|---|
| Protein GI | 257784741 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
|---|
| TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCATTA GAGAGCAGGT TGATCAGGTT CCCACTGATC CAGGCTGTTA TCTCTGGAAA
GACGGCTCTG GCAAGGTAAT CTATGTAGGC AAGGCTAAAA ACCTGCGTGC TCGCATGAGA
CAATATGTCA CGCTTCAAGA TGACCGTGCC AAGATTCCTC TGATGATGCA GGTCGTGCGC
AGTTTTGACT ACATTGTGGT AGAAAACGAG CATGAGGCAT TGGTGCTGGA GCGCAATCTC
ATCGCTCAGT ATCGTCCATA CTTTAACGTG GACTTTAAAG ACGATAAGAG CTATCCCTAC
ATTGCTATTA CCGAGTCAGA CACCTTCCCG GCAATTAAAT ACACGCGCGA GAAACACAAG
AAGGGTACGC GCTATTTTGG TCCCTATACC GATTCTTACG CGGCAAGACA AACCATCGAG
ACGCTCAGAA AAGTAGTGCC CATCTGCTCT GCTACGTGCG TGGAGTGGAA GCGTGCCAAG
CGCCTGCTTG AAAAAGATCC CGATGGCGCA GCTGTTGCTA ACTTGCTGCT GGCAAAGAAG
GGGAGACCTT GCTTTGATTA CCACGTAGGC AAGGGTCCTG GCGTGTGCGT TGGTGCTATT
GACACCGTTT CTTATGCTAA GAACGTTAGA CAGGTAGAAA ACTTCCTTCG CGGAAATCGC
TCCGAGATTG TTTCTGAGCT CAAAGATCAG ATGCAAGAAG CCGCTGCTGA CTTGGATTTT
GAAAAGGCAG CTAGGCTCAA GTCCCGTCTG CGTTCACTTT CTGATCTTGA TGACCGTCAG
CAAGTCACGT TTCCTACCTC GGTTAATATT GACCTCATTG GCATTTACCG AGAAGAAACC
ATCTCTGCAG CCTGCGTGTT TGTTGTGCGA GAAGGCCGTA CCATTCGCTC GGTTGAGTTT
ATCCTGGACA AAGGTTTGGA CGTTTCCGAG GAAGAGCTGG TTTCGGGCTT CCTAAAGCGC
TACTACGACG AAACCGCTGA CATTCCCGCA GAGGTTAACC TGCCCATCGA TCTTCTCGAT
GCGGAGGTTT TGTCCGAGTG GCTGACACAA AAGCGAGGTC ACAACTGCGT ACTTCACCAC
CCACAACGTG GCGAGAAATT CCGTCTACTT CAGATGGCTT CTGCTAATGC TCGTCACGCC
CTAATGCGCC ATATGATTCG TACAGGCTAT GCCGATGACC GCACTAACCA GGCGCTTCTT
CAGCTTGAAA GTGCACTTGC GCTTGATGCG CCGCCACTGC GCATTGAGTG CTTTGATATC
TCTACGCTTC ATGGAAACTT TACCGTTGCG TCTATGGTGG TCTTTACTAA CGGAAAGGCT
GATAAAAGCC AGTATCGACG CTTTAAAATC CGCGCTGAGC TTGATGAAGC AAACGACTTT
GTCTCAATGA CAGAGGTTCT GGGCAGAAGA TATAGTCCGG AGCGCATGGC AGACGAACGT
TTTGGCTCAA GGCCTGATTT GCTGGTAGTT GATGGCGGCA AACCTCAGCT GACCGCCGCA
ATCAATCAGC TCAATGAACT GGGATTAGAT ATTCCTGTCT GCGGCCTTGC TAAGTCTGAT
GAGGAAGTCT TTGTACCTTG GGATGACACG CCAATCGTGC TGCCTACAGG GTCAGCTTCT
CTGTATCTTA TTAAGCAAGT CCGTGATGAG TCTCACCGTT TTGCAATTAC CTTTCATCGT
GAGCTTAGAG ATAAGGCAAT GACCGTCTCT ATTCTGGACG AAATCCCTGG TGTAGGACCT
AAACGTAAAA AAGATATCAT GCGCCATTTT GGCTCTTTTA AGCGCTTAAA GGCTGCAAGT
GTTGAGGACA TCTCTCAGGT AAAAGGTGTT TCTGTGAACT TAGCAGAAAC CATCTACAAA
GAACTTAAAG CTTGGGAAGA ATCTTCAACA GCTGTACATG AGAAGTTAGA TGCAAGGGGA
GGAACTCATG AGTAA
|
|---|
| Protein sequence | MSIREQVDQV PTDPGCYLWK DGSGKVIYVG KAKNLRARMR QYVTLQDDRA KIPLMMQVVR
SFDYIVVENE HEALVLERNL IAQYRPYFNV DFKDDKSYPY IAITESDTFP AIKYTREKHK
KGTRYFGPYT DSYAARQTIE TLRKVVPICS ATCVEWKRAK RLLEKDPDGA AVANLLLAKK
GRPCFDYHVG KGPGVCVGAI DTVSYAKNVR QVENFLRGNR SEIVSELKDQ MQEAAADLDF
EKAARLKSRL RSLSDLDDRQ QVTFPTSVNI DLIGIYREET ISAACVFVVR EGRTIRSVEF
ILDKGLDVSE EELVSGFLKR YYDETADIPA EVNLPIDLLD AEVLSEWLTQ KRGHNCVLHH
PQRGEKFRLL QMASANARHA LMRHMIRTGY ADDRTNQALL QLESALALDA PPLRIECFDI
STLHGNFTVA SMVVFTNGKA DKSQYRRFKI RAELDEANDF VSMTEVLGRR YSPERMADER
FGSRPDLLVV DGGKPQLTAA INQLNELGLD IPVCGLAKSD EEVFVPWDDT PIVLPTGSAS
LYLIKQVRDE SHRFAITFHR ELRDKAMTVS ILDEIPGVGP KRKKDIMRHF GSFKRLKAAS
VEDISQVKGV SVNLAETIYK ELKAWEESST AVHEKLDARG GTHE
|
|---|
| |