| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0935 |
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| Symbol | |
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| ID | 8413806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1049159 |
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| End bp | 1050760 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645022523 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_003179955 |
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| Protein GI | 257784738 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGT TTATTAACCG TCCACTTTCG CGTCGTAGCT TCCTTGGTGG AGCAACTGTA
GCAGCTGGCC TTGGTCTCAC CGCTTGTGGT GGTGGACAGC AGAAGGCACC TGAAGCTCCA
TCTGGAAAGG AAGGCGGCAG CACAATTACT GCTGGTACCG CTTATTCAAC CCAGAATTAT
GATCCATCTA CCACTTCATC AGCACTTGCT CTTGGCGTTA ACTGGCAAGT AGTTGAGGGC
CTTTATGGTC TTAACTTCCA CGACTACTCT ACGTTCAATG AGCTTGCTAC TGCTGATCCA
AAGAAGGTTG ACGATAACAC CTTTGAGATT ACCATCCGTG ACGGCGCAAA GTTCTCTGAT
GGCAACGAGG TAAAGGCAGA TGACGTTGTT GAGTCCTTCA ACCGTTCTTC TGCAAAGGGC
AGCGTTTACG TCCCAATGCT TGCTCCAATT GCTTCCGTAG AGAAGAAGGA TGACAAGACT
GTTACCGTTA AGACTACTAT TGCCAACTTC TCCCTCCTCA AGGAGCGTCT GTCCATCGTT
CGCGTTGTTC CAGCAAGCAG CTCCCAGGAT GAGATGAAGA AGCAGCCAAT TGGCTCTGGT
CCATGGAAGT TTGAGTCCAT CTCTGACAAC ACTCTTGACC TTGTTCCAAA CACTAACTAC
AACGGTGCAA CTCCTGCTAA GGACGAGAAG CTCCATTATG ATGTTCTTAA GGATCCAACT
GCTCGTCTGA CCGCACAGCA GGACGGAACC ACCCTTGCTA TGGAAATGGT TCCTGCAGAC
GCTGTAGACC AGCTCAAGGG TGCAGGCTGC ACTGTCGACG CTGTTCAGGG CTTTGGTGTT
CGTTTTGCAA TGTTTAACCT TGGCAAGGCT CCTTGGGACA ACGTTAAGGT TCGCCAGGCA
TGCCTCTATG CACTTGATAC AGACAAGATG CTCTCTAATG CATTCTCTGG TCAGGCTGAG
GTTGCTACCA GCTATCTTCC TTCTTCTTTT GCTAACTATC ACAAGGCATC CACTGTTTAT
GCACATGATG TTGATAAGGC TAAGAAGCTT ATTTCTGAGT CTGGTATCAC TCCAGGTGAT
GTTGTTCTTC GTACCACTGA TAACGAGCAG GTTAAGTCCA TGGCAACTCA GGTCAAGAAC
GACCTCGACG CACTTGGATT TAACGTAAAC ATCGTTTCCG ATACTTCTCC AGCAACGTAT
GCTGCAATCG ATGCAGCCGA CGGCTCTTGG GACATCTTGC TTGCCCCTGG TGATCCTTCC
TGCTTCGGCG CAGACGTTGA TTTGCTGCTC AACTGGTGGT ATGGCGATAA CGTTTGGATG
ACCAAGCGTT GCCCATGGAA AGAGTCTGCT GAGTGGAACA AGCTTCACGA GCTCATGAAC
AAGGCTCTTG GTCAGTCTGG TGCTGATCAG CAGTCCACTT GGAATGAGTG CTTTGATATC
ATCGCTGAGA ACGTGCCTCT GTACCCAGTT CTCTTTGCTA AGACCTTCAC CGCTTCTTGG
AGCGAGAAGC CAAATGCAAA TGGTGTTGCA CTTAAGGGCT TTAAGGGCAT TGGTACTACA
GGTATGTCCT TCATTGATGT CAACACAGTT ACTGCTAGCT AA
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| Protein sequence | MSEFINRPLS RRSFLGGATV AAGLGLTACG GGQQKAPEAP SGKEGGSTIT AGTAYSTQNY
DPSTTSSALA LGVNWQVVEG LYGLNFHDYS TFNELATADP KKVDDNTFEI TIRDGAKFSD
GNEVKADDVV ESFNRSSAKG SVYVPMLAPI ASVEKKDDKT VTVKTTIANF SLLKERLSIV
RVVPASSSQD EMKKQPIGSG PWKFESISDN TLDLVPNTNY NGATPAKDEK LHYDVLKDPT
ARLTAQQDGT TLAMEMVPAD AVDQLKGAGC TVDAVQGFGV RFAMFNLGKA PWDNVKVRQA
CLYALDTDKM LSNAFSGQAE VATSYLPSSF ANYHKASTVY AHDVDKAKKL ISESGITPGD
VVLRTTDNEQ VKSMATQVKN DLDALGFNVN IVSDTSPATY AAIDAADGSW DILLAPGDPS
CFGADVDLLL NWWYGDNVWM TKRCPWKESA EWNKLHELMN KALGQSGADQ QSTWNECFDI
IAENVPLYPV LFAKTFTASW SEKPNANGVA LKGFKGIGTT GMSFIDVNTV TAS
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