| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0934 |
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| Symbol | |
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| ID | 8413805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1048046 |
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| End bp | 1049002 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022522 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_003179954 |
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| Protein GI | 257784737 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.6653 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.747134 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAACAACC TATTACGTCT TATCGGACGC CGTCTTATTG CGCTGCCGAT TATGGCTCTA
GGCGTCACCT TTCTCGTATT CTTCCTAATG TCTTTCTCGC ATGTTGATCC TGCATATAAT
GCCTTGGGAG AGTCTGCTTC TGAAGAAGCT ATCCAGCAGT ATCACATTGA GAATGGTCTT
GATGATCCAT GGCCTGTGAG ATATGTACGT TATATCGGTG ATGTTGCTCA TGGAAATTTG
GGTACCTATG GCACTTCTCA CTATTCAGTT GCTGCAAGAA TTTCAAAGGC TCTGCCAGTA
ACTATGCAGT TGACCTTTAT GGGTCTTTTC ATTGGCGCAA TAGTTTCGTT TACGTTGGGT
GTTATTGCGG CTCTCTATAG AGACCAATGG CCCGATCAAA TTATCCGTGT ATTCTCAATT
GCCGGTCTTG CAACGCCATC ATTCTGGTTG GCAGTTCTTT TGATTCTGGT CTTTGCGTCT
ACACTTAAGC TACTGCCTGC TTCTGGTGCA TTACCGGATC CTACGGTAAA TTTTGGCGGC
TACCTTGCCC GCATGATTAT GCCGGCATTT GCACTTGCGG TCCCAATGTC TGGTCAGATG
ACTCGTATTG TTCGTACCGC AATGGTTGAA GAGCTTGACA AGGACTATGT CCGCACTGCT
CGCGGTGCTG GTATTCCAGA GCGAATCGTC ATCGCAAGAA ACGTACTACG CAACGCTCTT
ATTACCCCTG TAACCACGCT TGGTCTCAAG ATTGGTTATC TCATGGGTGG CGCCGTTGTT
ATTGAGGTTA TTTTTAACCT TCCTGGCATG GGCACTGCTA TTCTCGAGGG TATCCAGGGT
AACGAGGCAA TGCTTGTTCA GGGTGTTGTC GTTGTTGTTG CACTGTCCTT CATCATCATC
AACATTGTTG TTGATATGTT GTACATCTTG ATTAACCCAC GCATTAGGAC GGTGTAG
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| Protein sequence | MNNLLRLIGR RLIALPIMAL GVTFLVFFLM SFSHVDPAYN ALGESASEEA IQQYHIENGL
DDPWPVRYVR YIGDVAHGNL GTYGTSHYSV AARISKALPV TMQLTFMGLF IGAIVSFTLG
VIAALYRDQW PDQIIRVFSI AGLATPSFWL AVLLILVFAS TLKLLPASGA LPDPTVNFGG
YLARMIMPAF ALAVPMSGQM TRIVRTAMVE ELDKDYVRTA RGAGIPERIV IARNVLRNAL
ITPVTTLGLK IGYLMGGAVV IEVIFNLPGM GTAILEGIQG NEAMLVQGVV VVVALSFIII
NIVVDMLYIL INPRIRTV
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