Gene Apar_0924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0924 
Symbol 
ID8413795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand- 
Start bp1037230 
End bp1038255 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content50% 
IMG OID645022512 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_003179944 
Protein GI257784727 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.296941 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTAA AGGTTGCTAT TAACGGTTTT GGCCGCATTG GTCGCCTTGC ATTTAGGCAG 
ATGTTTGGTC ACGAGGGTTC TGAGATCGTT GCAATCAACG ACCTTACTTC TCCAGAGATG 
CTTGCATATC TTCTGAAGTA TGACTCTACT CAGGGCAACT ACTCCCGCGA TCACAAGGTA 
GAGGCAACTG ACCACTCCAT CATCGTTGAC GGTCACGAGA TTGTTATTTA CAAGGAGGCA 
GACGCTAACA ACCTGCCTTG GGGCGATCTC AACGTTGACG TTGTTCTTGA GTGCACCGGT 
TTCTACACTT CTAAGGACAA GGCACAGGCT CACATCAATG CTGGTGCTAA GAAGGTTGTT 
ATTTCTGCTC CTGCAGGCAA TGACCTTCCA ACCATCGTCT TCAACGTTAA CCATGAGACC 
CTCACTGCAG ATGACAATAT CATCTCCGCA GCTTCCTGCA CCACCAACTG CCTTGCTCCT 
ATGGCAAAGG GTCTCAACGA CTTCGCAACT ATCAAGTCCG GTATCATGAC CACCATTCAC 
GCATACACTG GTGACCAGAT GATTCTTGAC GGACCACAGC GCAAGGGTAA CTTCCGTCGT 
TCCCGTGCTG GTGCAGAGAA CATCGTTCCT AACTCCACTG GTGCTGCTAA GGCAATTGGT 
CTTGTTCTTC CTGAGCTCAA CGGCAAGCTC ATTGGCGCTG CTCAGCGCGT TCCTACGCCA 
ACTGGCTCCC TCACCAACCT CTATGCTGTT GTTGACAAGA AGGTCACTGT TGACGAGGTT 
AACGCTGCAA TGAAGGCTTA TGCAGAGACC ATTCCTGAGA CCTTTGGTTA CAACGAGGAT 
GACATTGTTT CTCGCGATAT CGTCGGCGAG ACTCACGGCT CCATCTTCGA CGCAACTCAG 
ACCATGTGCT CTGACCTTGG CGATGGCACT ACTCTTGTTC AGGTTACCTC TTGGTACGAC 
AACGAGAACT CCTACACTTC TCAGATGGTC CGCACCATCA AGTACTTCGA GAAGTTCGTT 
GCTTAA
 
Protein sequence
MAVKVAINGF GRIGRLAFRQ MFGHEGSEIV AINDLTSPEM LAYLLKYDST QGNYSRDHKV 
EATDHSIIVD GHEIVIYKEA DANNLPWGDL NVDVVLECTG FYTSKDKAQA HINAGAKKVV 
ISAPAGNDLP TIVFNVNHET LTADDNIISA ASCTTNCLAP MAKGLNDFAT IKSGIMTTIH 
AYTGDQMILD GPQRKGNFRR SRAGAENIVP NSTGAAKAIG LVLPELNGKL IGAAQRVPTP 
TGSLTNLYAV VDKKVTVDEV NAAMKAYAET IPETFGYNED DIVSRDIVGE THGSIFDATQ 
TMCSDLGDGT TLVQVTSWYD NENSYTSQMV RTIKYFEKFV A