Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0918 |
Symbol | |
ID | 8413789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1030237 |
End bp | 1032270 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 645022506 |
Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
Protein accession | YP_003179938 |
Protein GI | 257784721 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.233334 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGACA CTACTAATAC TTCAACAAAG CAGGGAAGTG TAGAGATGGA CGATGTCCTT CGCTACGAAC TGCTCGAATC AAACGGTCCA AAGGGTGCTC CTACAGGCGA TCCAGTTCTT TCTGTTCGCA ATCTTAAGGT TTCCTTTAAT ACTGAGGCTG GTCGTGTAGA CGCAGTCCGC GGTGTTAACT TTGACCTTTG GGGTGGTCGT ACCCTTGGTA TCGTAGGTGA GTCTGGCTCT GGTAAGTCAG TAACTGCTCT GTCTCTTATT GGTCTTCTTG ATGACAATGC TCACGTTACC GGTTCTATTA AGCTTGGTGA TGAAGAACTC ATTGGCAAAA CCGATGAGGA GATGTCAAAG CTTCGTGGTA CTAAGATTTC TATGATTTTC CAAGATCCAC TGTCTGCTTT GACTCCAATG TTCTCTATTG GAGACCAGCT TGCAGAGGCT CTACTTACGC ATAATCCCAA CATGAGCAAG GCAGATGTTC GTAAGCGCTG TATTGAGCTT CTTTCTATTG TTGGCATTAC TGATCCAGAG AATCGTCTGG ATTCCTTCCC ACATGAGTTC TCTGGTGGTA TGCGTCAGCG TGTTGTTATT GCTATTGCTA TTGCAAACAA TCCTGACATC ATCATTGCAG ATGAGCCAAC CACTGCTCTT GATGTAACCA TCCAGGCTCA GATTCTTGAT GTTTTGAAGG TTGCACAGAA AGAGACTGGT GCAGCAGTTG TTCTGATTAC TCACGACCTT GGTGTTGTTG CAGGCACTGC TGATGATATT ATGGTTATGT ACGCAGGTCG TGGCGTCGAG CGCGCAAGTG TTGATACGCT TTTTGCTGAG CCGCGTCATC CTTACACCAT GGGTCTTCTA GGTGCTGTTC CTAAACCACA TCTTCAGGCA GAGCACAGGC TTGTTCCTAT TAAGGGTAAT CCACCATCAC TTGCGGCCAT TCCTACTGGT TGTCCTTTTA ACCCACGTTG TCCTATGGCT ACTGCTGAAT GCTCTAAGAA AGAGCCAGTA TTGCTTCCTG CAAATGCTGC TGAGGGTCAC TTGGCATCTT GCCACCACCT TCAGGAGATT TGCGAGAAAA ACCTTACCTA TGCTGAGGTG TATCCAGACT TTGAGCCAGT CCTTCCAAAG TGGGTCGATG TTCCACGTAA TGAGCGTCCT GTTGTGCTTA AGGTCGAGAA TCTTACTAAG ACGTTCCCTG TTCAGGGTAA GGGCTTTATT AGGCGTAGCA AGGGCACTAT GACTGCTGTT GACCGTGCAA GCTTTGAGAT TCATGAGGGA GAAACTCTTG CGCTTGTTGG TGAGTCTGGC TCTGGTAAGT CAACAACTCT GATGCAGATT ATGGATCTGT TGAAGCCTGA GGATGGTCGC ATTACTGTCC TCGGTAAAGA TGTTGCTGAG CTTAAGAATG CTGCGCAGCG CAGAGAGCTT CGTAAGGATC TTCAGGTAAT TTTCCAGGAT CCAATGAGTT CTCTTGATCC TCGTATGCCG GTCTATGACG TTTTGGCAGA GCCGCTTCAG GCGCAGGGTT GGAACAAAGA GGACATTAAT ACCCGTATTG GTGAGCTTAT GCGTCTGGTT GGTATTAATC CAGACTATGT TGACCGTTTC CCATCTCAGT TCTCTGGTGG TCAGCGTCAG CGTATTGCTA TTGCTCGTGC TCTTGCAACA AGTCCAAAAA TTCTTCTGTT GGACGAGCCA ATTGCATCTT TGGACGTTTC CATTCAGGCA GGTATTATTA ATCTTCTTGA GGATCTTCAG GTTCAGTTGA AGATTTCTTA TCTCTTTGTC GCTCATGATC TTGCAGTTAT TCGTCATATT TCTGATACTG TTGCTGTTAT GCACTTGGGC AAGATCGTTG AGTATGGTGA GACTGAAGAG GTCTTTACTA ATCCGCAAGA TCCTTACACC AAGGCGCTTC TCTCGGCTAT TCCAATTCCT GATCCAAAGA TTGAGCGTAC CCGTGAGCGT ATGATTTATC AGGATGGTAA GCTAGTTCCT GCAACTCACA TTTCTAACGA GTAA
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Protein sequence | MSDTTNTSTK QGSVEMDDVL RYELLESNGP KGAPTGDPVL SVRNLKVSFN TEAGRVDAVR GVNFDLWGGR TLGIVGESGS GKSVTALSLI GLLDDNAHVT GSIKLGDEEL IGKTDEEMSK LRGTKISMIF QDPLSALTPM FSIGDQLAEA LLTHNPNMSK ADVRKRCIEL LSIVGITDPE NRLDSFPHEF SGGMRQRVVI AIAIANNPDI IIADEPTTAL DVTIQAQILD VLKVAQKETG AAVVLITHDL GVVAGTADDI MVMYAGRGVE RASVDTLFAE PRHPYTMGLL GAVPKPHLQA EHRLVPIKGN PPSLAAIPTG CPFNPRCPMA TAECSKKEPV LLPANAAEGH LASCHHLQEI CEKNLTYAEV YPDFEPVLPK WVDVPRNERP VVLKVENLTK TFPVQGKGFI RRSKGTMTAV DRASFEIHEG ETLALVGESG SGKSTTLMQI MDLLKPEDGR ITVLGKDVAE LKNAAQRREL RKDLQVIFQD PMSSLDPRMP VYDVLAEPLQ AQGWNKEDIN TRIGELMRLV GINPDYVDRF PSQFSGGQRQ RIAIARALAT SPKILLLDEP IASLDVSIQA GIINLLEDLQ VQLKISYLFV AHDLAVIRHI SDTVAVMHLG KIVEYGETEE VFTNPQDPYT KALLSAIPIP DPKIERTRER MIYQDGKLVP ATHISNE
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