Gene Apar_0918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0918 
Symbol 
ID8413789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1030237 
End bp1032270 
Gene Length2034 bp 
Protein Length677 aa 
Translation table11 
GC content46% 
IMG OID645022506 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_003179938 
Protein GI257784721 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.233334 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGACA CTACTAATAC TTCAACAAAG CAGGGAAGTG TAGAGATGGA CGATGTCCTT 
CGCTACGAAC TGCTCGAATC AAACGGTCCA AAGGGTGCTC CTACAGGCGA TCCAGTTCTT
TCTGTTCGCA ATCTTAAGGT TTCCTTTAAT ACTGAGGCTG GTCGTGTAGA CGCAGTCCGC
GGTGTTAACT TTGACCTTTG GGGTGGTCGT ACCCTTGGTA TCGTAGGTGA GTCTGGCTCT
GGTAAGTCAG TAACTGCTCT GTCTCTTATT GGTCTTCTTG ATGACAATGC TCACGTTACC
GGTTCTATTA AGCTTGGTGA TGAAGAACTC ATTGGCAAAA CCGATGAGGA GATGTCAAAG
CTTCGTGGTA CTAAGATTTC TATGATTTTC CAAGATCCAC TGTCTGCTTT GACTCCAATG
TTCTCTATTG GAGACCAGCT TGCAGAGGCT CTACTTACGC ATAATCCCAA CATGAGCAAG
GCAGATGTTC GTAAGCGCTG TATTGAGCTT CTTTCTATTG TTGGCATTAC TGATCCAGAG
AATCGTCTGG ATTCCTTCCC ACATGAGTTC TCTGGTGGTA TGCGTCAGCG TGTTGTTATT
GCTATTGCTA TTGCAAACAA TCCTGACATC ATCATTGCAG ATGAGCCAAC CACTGCTCTT
GATGTAACCA TCCAGGCTCA GATTCTTGAT GTTTTGAAGG TTGCACAGAA AGAGACTGGT
GCAGCAGTTG TTCTGATTAC TCACGACCTT GGTGTTGTTG CAGGCACTGC TGATGATATT
ATGGTTATGT ACGCAGGTCG TGGCGTCGAG CGCGCAAGTG TTGATACGCT TTTTGCTGAG
CCGCGTCATC CTTACACCAT GGGTCTTCTA GGTGCTGTTC CTAAACCACA TCTTCAGGCA
GAGCACAGGC TTGTTCCTAT TAAGGGTAAT CCACCATCAC TTGCGGCCAT TCCTACTGGT
TGTCCTTTTA ACCCACGTTG TCCTATGGCT ACTGCTGAAT GCTCTAAGAA AGAGCCAGTA
TTGCTTCCTG CAAATGCTGC TGAGGGTCAC TTGGCATCTT GCCACCACCT TCAGGAGATT
TGCGAGAAAA ACCTTACCTA TGCTGAGGTG TATCCAGACT TTGAGCCAGT CCTTCCAAAG
TGGGTCGATG TTCCACGTAA TGAGCGTCCT GTTGTGCTTA AGGTCGAGAA TCTTACTAAG
ACGTTCCCTG TTCAGGGTAA GGGCTTTATT AGGCGTAGCA AGGGCACTAT GACTGCTGTT
GACCGTGCAA GCTTTGAGAT TCATGAGGGA GAAACTCTTG CGCTTGTTGG TGAGTCTGGC
TCTGGTAAGT CAACAACTCT GATGCAGATT ATGGATCTGT TGAAGCCTGA GGATGGTCGC
ATTACTGTCC TCGGTAAAGA TGTTGCTGAG CTTAAGAATG CTGCGCAGCG CAGAGAGCTT
CGTAAGGATC TTCAGGTAAT TTTCCAGGAT CCAATGAGTT CTCTTGATCC TCGTATGCCG
GTCTATGACG TTTTGGCAGA GCCGCTTCAG GCGCAGGGTT GGAACAAAGA GGACATTAAT
ACCCGTATTG GTGAGCTTAT GCGTCTGGTT GGTATTAATC CAGACTATGT TGACCGTTTC
CCATCTCAGT TCTCTGGTGG TCAGCGTCAG CGTATTGCTA TTGCTCGTGC TCTTGCAACA
AGTCCAAAAA TTCTTCTGTT GGACGAGCCA ATTGCATCTT TGGACGTTTC CATTCAGGCA
GGTATTATTA ATCTTCTTGA GGATCTTCAG GTTCAGTTGA AGATTTCTTA TCTCTTTGTC
GCTCATGATC TTGCAGTTAT TCGTCATATT TCTGATACTG TTGCTGTTAT GCACTTGGGC
AAGATCGTTG AGTATGGTGA GACTGAAGAG GTCTTTACTA ATCCGCAAGA TCCTTACACC
AAGGCGCTTC TCTCGGCTAT TCCAATTCCT GATCCAAAGA TTGAGCGTAC CCGTGAGCGT
ATGATTTATC AGGATGGTAA GCTAGTTCCT GCAACTCACA TTTCTAACGA GTAA
 
Protein sequence
MSDTTNTSTK QGSVEMDDVL RYELLESNGP KGAPTGDPVL SVRNLKVSFN TEAGRVDAVR 
GVNFDLWGGR TLGIVGESGS GKSVTALSLI GLLDDNAHVT GSIKLGDEEL IGKTDEEMSK
LRGTKISMIF QDPLSALTPM FSIGDQLAEA LLTHNPNMSK ADVRKRCIEL LSIVGITDPE
NRLDSFPHEF SGGMRQRVVI AIAIANNPDI IIADEPTTAL DVTIQAQILD VLKVAQKETG
AAVVLITHDL GVVAGTADDI MVMYAGRGVE RASVDTLFAE PRHPYTMGLL GAVPKPHLQA
EHRLVPIKGN PPSLAAIPTG CPFNPRCPMA TAECSKKEPV LLPANAAEGH LASCHHLQEI
CEKNLTYAEV YPDFEPVLPK WVDVPRNERP VVLKVENLTK TFPVQGKGFI RRSKGTMTAV
DRASFEIHEG ETLALVGESG SGKSTTLMQI MDLLKPEDGR ITVLGKDVAE LKNAAQRREL
RKDLQVIFQD PMSSLDPRMP VYDVLAEPLQ AQGWNKEDIN TRIGELMRLV GINPDYVDRF
PSQFSGGQRQ RIAIARALAT SPKILLLDEP IASLDVSIQA GIINLLEDLQ VQLKISYLFV
AHDLAVIRHI SDTVAVMHLG KIVEYGETEE VFTNPQDPYT KALLSAIPIP DPKIERTRER
MIYQDGKLVP ATHISNE