| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0911 |
|---|
| Symbol | |
|---|
| ID | 8413779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1019509 |
|---|
| End bp | 1020807 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 645022496 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003179931 |
|---|
| Protein GI | 257784714 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0392] Predicted integral membrane protein |
|---|
| TIGRFAM ID | [TIGR00374] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00529353 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.444552 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGCC CAGATGGCGC GTCTGAAACC GAGCACCCCT CATCTTCATC TCGTGTGACG
GTAAAGATTG GATCTACAAC CGTCAAGGGT GTTTCAACTA AAAAACCTAA GATTAGTGTT
GCTCCTACTG CTTCATCTGA ACAGGTAGAA GAGGCAAAAG AGAGTTTTGG TCAGGTTAGA
AAAAGTATCC TCTTCCTCTT TGCGGTAGTA ATACTTTATG TACTCTACAT TGTTTTCTCT
GGTCAGTTTG ATGAGTTTGT TGTTGCCCTA GCTGACGTAG ACACAGGATG GCTTATTGCT
GGTGCTCTTT GCTATTTTGT CTACTATTTC CTTGGTATTC TCGCTTATGT GATTTCGGTT
ATTACAGATC CTGAGAGTCC CGTTGGCGTT AGAGATTTGA TGAGCGTTGA GGCGTCGGGC
ATCTTCTTCA TGAATTTAAC GCCAAACGGC GCAGGTGCTG CTCCTGCTCA GATTTACCGT
TTGACTCGTG CGGGTATTTC TGTTGGCCAA GCAGGAGCCT TGCAGTTTAC ACGCTTTGTT
ATGTATGAGG CAGGCGAGGG AATCTTTGCA GCTCTTATGC TTATTTTTAG GGCTAATTAT
TTCTATGAGC AATTTGGCGA CGTAACGGTT ATTGGCGTTA TTTTATTTGG TGCAAAGATA
GTGATGGTTG CAGTTATCTT AGCTATCTGC CTGCTTCCTA AAATGGTAAA GTCAGTGGGA
AACTGGGGCT TAAGATTGCT CTCTAAGCTA CGCATTGTAA AGCGCTACGA TCACTGGCAT
GGCATTATTA ACACACAGGT AGACGAGTTC TCAAACGGCT TTAAGACTGC CGCAAAGAAT
ATCCCAGAAA TGTGTATTGT CTTGCTGGTC ACCTTAGTTC AGCTTGGCTG CCTCTATGCG
CTTCCATACT TTGTTTTGCG TGCACTTGGG CAACCAGCTG ATCTTTTGAC CTGCCTTGCT
TCTGGTTCAA TGCTTGAGCT CTTGACTTCG GCTATTCCGC TTCCTGGTGG TACTGGTGGT
GCTGAGGGTG GCTTTGCCTT TTTGTTTGGT CATATGTTTG GTGAGAAAAT TGCCGCAGGC
TTTGTACTCT GGCGCGCTAT CGAATATCTG CTTCCAACTC TGGTAGCAAG CATGCTTTTG
GGGCTCAGAT CTCATGATCA TGAGCCTATA TACCATAAGT GGAATCGCTT CCGCCAGCGT
TTCTCTGCCT TTGTAAATGG CGAGAAACCC GCTGCTGCTT CTACGTTACC TCGTCCAGAT
ACATCTGGTA TCCAAATTAA GGTTAAGCGT AAGAAATAG
|
|---|
| Protein sequence | MDRPDGASET EHPSSSSRVT VKIGSTTVKG VSTKKPKISV APTASSEQVE EAKESFGQVR
KSILFLFAVV ILYVLYIVFS GQFDEFVVAL ADVDTGWLIA GALCYFVYYF LGILAYVISV
ITDPESPVGV RDLMSVEASG IFFMNLTPNG AGAAPAQIYR LTRAGISVGQ AGALQFTRFV
MYEAGEGIFA ALMLIFRANY FYEQFGDVTV IGVILFGAKI VMVAVILAIC LLPKMVKSVG
NWGLRLLSKL RIVKRYDHWH GIINTQVDEF SNGFKTAAKN IPEMCIVLLV TLVQLGCLYA
LPYFVLRALG QPADLLTCLA SGSMLELLTS AIPLPGGTGG AEGGFAFLFG HMFGEKIAAG
FVLWRAIEYL LPTLVASMLL GLRSHDHEPI YHKWNRFRQR FSAFVNGEKP AAASTLPRPD
TSGIQIKVKR KK
|
|---|
| |