| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0906 |
|---|
| Symbol | |
|---|
| ID | 8413773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 1013945 |
|---|
| End bp | 1015798 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 645022490 |
|---|
| Product | Histone acetyltransferase |
|---|
| Protein accession | YP_003179926 |
|---|
| Protein GI | 257784709 |
|---|
| COG category | [B] Chromatin structure and dynamics
[K] Transcription |
|---|
| COG ID | [COG1243] Histone acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01211] histone acetyltransferase, ELP3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.301086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.526584 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAC TCATTTTGGA CATATTGCAG CAGCTCAGAA ATGGCTCACA AGGTGCTCTT
GATGCGCATC AGCTTGAGAT ACTTATTAAC TCGCATAACA GCGGAATTGA CTCCAGCGCC
CACAGTACAG AGCGCGAGAA ACTCATTCCT AAACGAGCAA TTCTCCCCTA TTTTTTGCAA
GTAAAGCAAA AAAACAATGA ACTGTGGCAA TCATGGAATG TAACACCTGA GCTAGAAGAA
AGGTTTATCC GCTCTGTTCG CATGAAGCCT CGTCGCACCG CTTCTGGTGT TGCCACCATT
ACCGTAATCA CCAGGCCGCA TACCTGCTCA AGCAATTGCA TTTATTGCCC ATGCGATCTG
CGTATGCCTA AGAGCTACCT TGCTAACGAA CCCGCCTGTC AGCGTGCTGA GCTTACGTTT
TTTGATCCAT ACGTACAAGT TGCTGCTCGT CTTCAGGCAC TCCACCAGAT GGGTCACTCA
ACCGATAAAG TGGAGCTTAT TGTGCTTGGT GGTACCTGGA GCGATTATCC AGAGAGTTAC
CAGTACTGGT TTATCAAAGA GCTCTTCCGT GCGCTCAATG AATGGCCCAA CTCTCCTAGC
CACATCCAGG AGCGCCTTGA TTGGTACTCC TCGTTTGGCT TGCAGAACTC TGAAGAGGCA
CTCTCTTCCT TTGTTGCTGA ACAGCAAGCG GCTGTCTTTG ATGATGCTGT CACGTATAAC
CAGGCTTTTC ATAAGCTCTA CGATTCCAGC CGTCCTCACC AAAGAACCTG GTCTCAGATG
CAAAGCACCT ATGATGAGTT GGTAGAGCAG CAACGCGTTA ATGAGACGGC CGCTGCCCGT
GTGGTAGGTC TTGTTATTGA AACCAGGCCC GATACCATCA CGCCAGGTAA CCTACGCATG
TTTAGACAGC TTGGATGCAC CAAAATTCAA ATTGGCATTC AGAGCACGCG TCAAGAAATT
CTTGACGCAA ACAAACGTCA GATGAGCGTT GCTCAGATTA AACGAGCTTT CTCACTCATT
CGCTTGTACG GATTTAAAAT CCACTCTCAC CTAATGGTGA ATCTTCTTGG CGCAACTCCT
GAAGCAGACA AACAGGACTT TAAAACGTTT GTCACGGATC CAGGATTTCT CCCCGATGAG
ATCAAACTGT ATCCGTGCGC TCTAGTATCT GGAACACAAC TGGTGCAGAA GTTTCATGAA
GGTACCTGGC AACCATACAC AAAAGACGCG CTGGTAGATG TACTTGTTCA AGATGTGCTT
AACACACCAC CGTATGTACG CATTTCTCGC ATGATTAGAG ACATTAGCGC AACCGACATC
TTAGTAGGAA ACAAACACAC CAACCTACGT CAAATGGTGG AACAAGAACT TGCTGCTGAA
GACGTTGCAA GCCGCGTACA GGAAATTCGC TTTAGAGAAA TTAACCAGCA GCAGGTACGC
GCCAATGAAC TCACACTGCA AGACTTTGTC TACACCACCT CAGTTAGTAA CGAGCACTTC
CTGCAATGGG TGACTACTGA CAATAAAATT GCAGGTTTCT GTAGGCTTTC ACTTCCCCAC
TGGGACAAAC TGATCTCTGG CACATGTGAT GTTAGTGCCG ATGAGTTGCT GGTACAGCCA
GGTCAAGCCA TGATTAGAGA GCTTCACGTA TACGGACAGG CATTATCCCT AGGCTCGGAA
GGAATGTCTG CCCAGCACCA GGGTCTAGGT CAAAAACTTC TTGCCAAAGC TTCCTCTATC
GCAGCTGATG AGGGATATAC CAGTCTTAAT GTTATCAGCT CAATTGGAAC ACGCGCCTAC
TATCGCACGC AGGGCTTTAC TGATGCTGGC CTCTACCAAC AAAAAGCCTT GTAA
|
|---|
| Protein sequence | MNELILDILQ QLRNGSQGAL DAHQLEILIN SHNSGIDSSA HSTEREKLIP KRAILPYFLQ
VKQKNNELWQ SWNVTPELEE RFIRSVRMKP RRTASGVATI TVITRPHTCS SNCIYCPCDL
RMPKSYLANE PACQRAELTF FDPYVQVAAR LQALHQMGHS TDKVELIVLG GTWSDYPESY
QYWFIKELFR ALNEWPNSPS HIQERLDWYS SFGLQNSEEA LSSFVAEQQA AVFDDAVTYN
QAFHKLYDSS RPHQRTWSQM QSTYDELVEQ QRVNETAAAR VVGLVIETRP DTITPGNLRM
FRQLGCTKIQ IGIQSTRQEI LDANKRQMSV AQIKRAFSLI RLYGFKIHSH LMVNLLGATP
EADKQDFKTF VTDPGFLPDE IKLYPCALVS GTQLVQKFHE GTWQPYTKDA LVDVLVQDVL
NTPPYVRISR MIRDISATDI LVGNKHTNLR QMVEQELAAE DVASRVQEIR FREINQQQVR
ANELTLQDFV YTTSVSNEHF LQWVTTDNKI AGFCRLSLPH WDKLISGTCD VSADELLVQP
GQAMIRELHV YGQALSLGSE GMSAQHQGLG QKLLAKASSI AADEGYTSLN VISSIGTRAY
YRTQGFTDAG LYQQKAL
|
|---|
| |