Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0888 |
Symbol | |
ID | 8413754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 991538 |
End bp | 994210 |
Gene Length | 2673 bp |
Protein Length | 890 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 645022471 |
Product | cell wall hydrolase/autolysin |
Protein accession | YP_003179908 |
Protein GI | 257784691 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000852469 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.142876 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGCA GCTTATTTAG TACTCGCGGT AAATTGTTTG CTGTTTTGCT TTTTGTTGTC GCAGCATTAT TTGTAACAAC AGTTCAAAAC GTATATGCAA CTACCTATAC AACTATGGAT GCCCAAGGCA ACATAGTTCA GAGCCAATCT CTAAGTGATG CTGTTGCACT TTCTCGTGCA ACAGGAAGAC CAATCGCATT GGATCCTGGT CACAGTGATG GAACAGATGG TCGAGATCCA GGTGCAATGT ATTACGGTTT AAAAGAAGGT GATATTGCCT GGGCTACGGC CATGTATGTC AAGAAATATC TTGGGCAATG GGGGGTCCCT GTTGTAGTTG TTCGTGGGGA GCATGAAGAC CCTTCGCTCA AAACACGTGT ACAGCGCGCC GTTGATCATA ATGCCTGTGC CATTATTTCT TTGCATTACA ACGCAGGTCC TGCATCAGCA ACAGGCTCTG AGGTTTTAGT TCCTCATGAC GTTAGTTATA ACCACGATCT TTATGTTGCT GGGCAGGCTC TTGCCGGTAA GGTTAATTAT TACTTAAGAA ATAAAGCGGG CATTGTCACC CGAGGTGATG GTGCTACTGA GCGCGGCTAT AACGATAAAT ATGGAACAGA CTATTACGAG AATGGCGATG AGTCCGATTA CTACGGTATT GTTCGTTATG CTCGTCAAAA AGGAATTCTT GGTGTAGTTA TTGAGCACCA GTTCATTTCT AATCCCGCTC ATGCTGCTGA GTTTAAAGAT CTTGGCGATA ACTCAAAAGT TGACTATATT GGCTGGGCTG ACGCCTGGGC AATTTGGGAG ATGTATCACT CCGATACCTG GTGGAATATG AGGGGCATTT CCGCTGTTCA ACAGGGTAAC AAAGTGACGG TTAAACCTGT CTTGACTGGC GTTGTTACGG GTGCAACATT TACCTTTGGC TATACAGCTC CAGATGGTTC TTGGACAACT GTTGCGTATA AGACTACTGA TACATCTATT TCTTTTGTTC CTCCTATGAC TGGTCGATAC GTTTTGTATC TCAAGGCCAT TTCGTCTGAT GGACAGGAAA TTACACGTCA GATGAATTTT GAAGCAACCG AAGGTGCAGT CACCGGTTGG AAGCAAGTTG CTAACGGATG GATGTATACC GATGATAATG GCTTTAGGTA TGTAAATCGT TGGCTTAACG ATGCTGATGG TTGGCATTAC TTTGGCGCCC AAGGAATTGC AACTTCTGGT TGGATTACTA CTGCCGACGG TAAGACGTTC TATGCTGATC CATCATCTAC TCATAATGCT GTGAAGCTTG GCCAATTTAC GGTACAAAAT AGAGATTATT ATGCCGATAC CACTGCTGGA GTCATTAAAG ATGGCTGGGT AAATTATGGT GACGGAAATT GGTCGTGGGC TAACTCAGAT GGTTCACTCT ACGCTGGTTG GAAGCTTCTT CCAAACGGTA AGTGGTTCTA TTTTGATGCC AACAACAAAT ATCACGCAAG CTTTGGTCTT ATGTTTGATG GGGATCAGAA GTATTACGTT GACCGTGATC GTGGCTTGCT TTATGGCGGT TGGATTAGAC TCGCCGATAA CAATTGGGTA TGGGCTAATA CAGATGGTTC GCTCTATGCT GGTTGGAAGC TTCTTCCAAA CGGTAAGTGG TTCTACTTTG ATGAAAGCGC AGAATATCCT CTTCTAAAGA CAGGTGTCTT CACTATTTCT AGTGGTTCGT ATTATGTTGA TGCAAATAAG GGAATGACTT CTAATGATTG GGTCCAGTTA CCAAATAACG GCTGGGCTTG GGCTCAATCA AGTGGTGCTT TAGCTTCTGG TTGGTTCAAT ACTCCAAATG GCAAGACCTG GTACTTTGAT CCAACTACTC ATGAGCATGC TGTACTCATT GGTCTTCAGG TAATTAACGG TTCGTACTAT TACTTTGATT TGGGCTATGG CCTGCTGCGC AATCAAGACG TCACGCTTCC AGATGGTCGT GTTGTTCACG CAGATGCAAG TGGTGTTCTT AATATCAAAC CAACTGATAA AAATAACGAT AAAGACGGAA ACGTTGACGG CAATAACGGC AAAGAAAATA GTGACGCTGG AAATAACAAC ACACCAGCTG ACGACAATTC TCCAATTGAG CCAACTCGTG GTAATTTCTC TGATCGTACC AGCGTTCTTG GAGCTCCTCT TGTTTCTAAA GAGGACCTTC AAAGGGATTT CAACAAACGC GTAGGTTCTG CTTATCCCGC TATTTATGCA GAGAGGGGCG CAGCAACAGG AGCAGACTTT GTAAATCAAC TATGGCAAGC CGCAATTGAT GAAGGTGTTC GTCCAGAGCT TCTCTATGCA CAGGTCATGA TTGAGACGGG TAACCTCCGC TTTGGTGGCG ACGTCCTTCC TGAACAGTGC AACTTTGGCG GCCTTGGTGC AACTGGAAAC GGTGAGCACG GCAATTCGTT TGACACCGTT CTCAAAGGCC TCCGTGCACA GGCTCTTCAT CTTCGTGCTT ATGCGGGTTT TGAGCCACTG ACGGTTGATC CAAGCAAGGC TAGAGATGTG GACCCTCGTT ACGGTGCATG GATTCTTGCC AGGAAAGCTA ACATTATTCG TAAGCTTGCT GGTACGTGGG CAACGGATAA GAATTATGCT GTCAAGCTTG TTCGTGTAAT GAACGAGCTA TAA
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Protein sequence | MNRSLFSTRG KLFAVLLFVV AALFVTTVQN VYATTYTTMD AQGNIVQSQS LSDAVALSRA TGRPIALDPG HSDGTDGRDP GAMYYGLKEG DIAWATAMYV KKYLGQWGVP VVVVRGEHED PSLKTRVQRA VDHNACAIIS LHYNAGPASA TGSEVLVPHD VSYNHDLYVA GQALAGKVNY YLRNKAGIVT RGDGATERGY NDKYGTDYYE NGDESDYYGI VRYARQKGIL GVVIEHQFIS NPAHAAEFKD LGDNSKVDYI GWADAWAIWE MYHSDTWWNM RGISAVQQGN KVTVKPVLTG VVTGATFTFG YTAPDGSWTT VAYKTTDTSI SFVPPMTGRY VLYLKAISSD GQEITRQMNF EATEGAVTGW KQVANGWMYT DDNGFRYVNR WLNDADGWHY FGAQGIATSG WITTADGKTF YADPSSTHNA VKLGQFTVQN RDYYADTTAG VIKDGWVNYG DGNWSWANSD GSLYAGWKLL PNGKWFYFDA NNKYHASFGL MFDGDQKYYV DRDRGLLYGG WIRLADNNWV WANTDGSLYA GWKLLPNGKW FYFDESAEYP LLKTGVFTIS SGSYYVDANK GMTSNDWVQL PNNGWAWAQS SGALASGWFN TPNGKTWYFD PTTHEHAVLI GLQVINGSYY YFDLGYGLLR NQDVTLPDGR VVHADASGVL NIKPTDKNND KDGNVDGNNG KENSDAGNNN TPADDNSPIE PTRGNFSDRT SVLGAPLVSK EDLQRDFNKR VGSAYPAIYA ERGAATGADF VNQLWQAAID EGVRPELLYA QVMIETGNLR FGGDVLPEQC NFGGLGATGN GEHGNSFDTV LKGLRAQALH LRAYAGFEPL TVDPSKARDV DPRYGAWILA RKANIIRKLA GTWATDKNYA VKLVRVMNEL
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