| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0843 |
|---|
| Symbol | |
|---|
| ID | 8413709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 937360 |
|---|
| End bp | 938202 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 645022426 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_003179863 |
|---|
| Protein GI | 257784646 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.105002 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGATG AGTTCGAATC AATGGAGGTG TACAATCTTG AGTCTTTGGA TGATCAAAGA
CTGGAAGTAT ATGCTAAGCT CACCAACAAT CAACTGCGCA ATCGTTTAGA TCCTGCCCGT
GCACTTATGA TTTGTGAGTC TCCTTTTGTG GTAGAAACTG CCCTCTTATC TGGTTGTGTA
CCTTTGTCTT TTCTCACTAA TGCTTCACAT CTTGAGGCTG TCCAACAACT TATTCAGAAC
TACTGTTCAG TAGATGATGT TCCAATTTTT GTACTGTCTG ACAATCAGAT AGAAAAACTT
ACAGGATACA GAATGACTAG GGGCATCATT TGTGCCATGA GGAGACCTCA AGCTAGACCA
CTAGAGGAGA TTCTCAGCAC TTCAAAGTAC ATTGCCGTTT TGGAAGATCT TGTTGACGTA
AATAACGTAG GTGCAGTTTT TAGATCAGCT GCGGCACTCA ACGTAGATGC TGTTATCTTG
ACTGCTAAAT GTGCCGATAA CCTCTCTAGG CGTGTTCTGC GTGTTTCTAT GGGAACGGTT
CTTAATGTGC CTTGGACTCG CCTGGATGAA GAGACAACCT CACTGGATCT TATAGAAAAG
CTCAAGGCTC ATTCTTTTAC CACTTGTGCT CTTGCGCTTA CAGATTCTGC AGTACCTCTA
AATAAAGATC TGGTAAAAGG CAAAAAGGCC GCATTATTCT TTGGCAGTGA AGGCTATGGT
CTTGACGAGA AAACCATCGA GGCTTGTGAC ATTACTACTA TCATTCCTAT GTCGCATCAG
GTAGATTCAC TCAACGTTGC CGCGTCATCT GCCGTAGCAT TTTGGGAGCT CTTTGCTAGA
TAG
|
|---|
| Protein sequence | MRDEFESMEV YNLESLDDQR LEVYAKLTNN QLRNRLDPAR ALMICESPFV VETALLSGCV
PLSFLTNASH LEAVQQLIQN YCSVDDVPIF VLSDNQIEKL TGYRMTRGII CAMRRPQARP
LEEILSTSKY IAVLEDLVDV NNVGAVFRSA AALNVDAVIL TAKCADNLSR RVLRVSMGTV
LNVPWTRLDE ETTSLDLIEK LKAHSFTTCA LALTDSAVPL NKDLVKGKKA ALFFGSEGYG
LDEKTIEACD ITTIIPMSHQ VDSLNVAASS AVAFWELFAR
|
|---|
| |