| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0827 |
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| Symbol | |
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| ID | 8413693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 913723 |
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| End bp | 914664 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022410 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_003179847 |
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| Protein GI | 257784630 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000378584 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGCGAG GAGCTAGTGG AATTAACGCA CTTATTGCAA TTGACAAGCC GCTTGGCTTG
ACCAGCCATG ATGTGGTTTC TCGCGTCCGG CGCGTATTTG GCGAGAAACG CGTGGGACAC
GCGGGCACAC TTGATCCTAA TGCAAGTGGT GTACTGGTAG TTGGTATTGG ACTTGCTACA
AAGCTTTTGG GCCTTCTGAC GCTTGATCGC AAGGGGTATG TAGCTGACAT TTCGTTTGGA
GCTCGTACCT CAACTGATGA TGCAGATGGC AAGGTTGTAG CAACTGCAGC TGTTCCAGAA
GAACTGTATG ATATCGAGTT TGCTCGTATC GCATGTACAA AGCTAGTGGG TACTATAAAT
CAGCTTCCGC CTGTGGTTTC TGCAATCTCT GTTGATGGTA AACGTGCTTA TCAGCTTGTT
CGTGAAGGTA AGATGCCAGA GCTTGTAGCA CGCAGAGTTT CTATTTACGA TGCATCGCTT
TTGGCGGTGC ATACACCTTC TGATAAGAGT GACTCACTCG TGTGGACTGT TGCTTTTGAC
GTTTCTAAAG GTACCTACAT CAGGAGCATT GCTCGAGATC TTGGTCAGTC TCTTGGAACA
GAGGCTCATA TTAGTGGACT AAGAAGGACT TTCTCTGGTC CTATTACGCT TGGTAGTTGT
GTTTTATTAG AAGAGCTAGA GCAAAGTCCA GCTCAAATAC TTGAGGCCAA ACATCTCAAT
CCAACTGAGA CCCTCGGTTA TTCTGTGCAT AGGCTGACCG CAGCAGAATA TAAGTGTGTC
GAGGTTGGAA AGCGTTTTGG TATTCCAGAG GATCTTTGTG AAATTGCCAA TAATTCGCTG
GTCAGCCTTG TGTGGAATGA ATCTCTGGTA GGAATTTGGA TAAGGCAGGG TTCATGTCTT
GTCTGCCAGA CTAACTTCTC TCAAGGTATT TTGTGTAAGT AA
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| Protein sequence | MKRGASGINA LIAIDKPLGL TSHDVVSRVR RVFGEKRVGH AGTLDPNASG VLVVGIGLAT
KLLGLLTLDR KGYVADISFG ARTSTDDADG KVVATAAVPE ELYDIEFARI ACTKLVGTIN
QLPPVVSAIS VDGKRAYQLV REGKMPELVA RRVSIYDASL LAVHTPSDKS DSLVWTVAFD
VSKGTYIRSI ARDLGQSLGT EAHISGLRRT FSGPITLGSC VLLEELEQSP AQILEAKHLN
PTETLGYSVH RLTAAEYKCV EVGKRFGIPE DLCEIANNSL VSLVWNESLV GIWIRQGSCL
VCQTNFSQGI LCK
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