| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0824 |
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| Symbol | |
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| ID | 8413690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 909231 |
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| End bp | 910598 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022407 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_003179844 |
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| Protein GI | 257784627 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00671165 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000482481 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCTGCAA AAAAGGCAAA TGATGAGGTT AAACTCTCAG ATGAGCTTAC TAAAATTGTT
GATGATTTGG TAAGTTCTTC AAAGTCTAAC GGTAGTATCA GCGAAGACGA TATTCAGGTT
GCCATTCGTG ATATTGATGT CAATGATGAT GAGCTTTCTG ACCTGTATGA TTCGCTGCGT
GTCAAAGGCA TAGAGATTAC TACCGCATCT GAAGCAACCG TTTCTTTCGC TATTGAAGAT
GATGCCGCAG AAGATGATTT TTCATCCGAT GATGACTTAG ATAATTCATC TGATTTTGAA
GATGAAGACG ATGAAGATTT TGATGTCGTC AATGAGGCAC GTGAGGTCAA AGAGGCTCTT
CGTTCTGTTT CTAAGGCAAA AGTCTCTAAG CCAAAACGCT CTTCTCGCGC TCGTGCTCGC
CGTTCAGATA CTACTACTGT TATGCTTACC GGCGATCCCG TTCGCATGTA TCTTAAAGAG
ATTGGTAAGG TTGACCTGCT TACTGCGTCA GAAGAGGTTC ACCTTGCCAT GAAAATTGAG
GCAGGTACTG CAGCTTCTCA GAAGCTGGAG GACTTTGAGG ATGGCCTTAT TGAGCTTAAT
CGTGCAGAGC AGCGTCGTCT TATGCGTATT GAGTCCGTAG GACTTGACGC TAAACAGCAG
CTTATTTCTG CAAACCTACG TCTTGTTGTC TCAATTGCAA AGCGCTATGT TGGGCGCGGC
ATGCTATTCC TTGATCTTAT TCAGGAAGGC AATCTGGGTC TTATTCGCGC TGTAGAGAAG
TTCGATTACA CCAAGGGTTT CAAGTTCTCA ACTTATGCTA CCTGGTGGAT TCGTCAGGCA
ATTACCCGCG CTATTGCAGA CCAGGCTCGT ACCATTCGTA TTCCTGTTCA TATGGTAGAG
ACAATTAATA AACTCATCCG CGTTCAGCGT CAGCTTCTGC AAGATTTTGG TAGAGATCCC
ACCCCAGAAG AGATTGGCTC AGAAATGGGT ATGTCTCCTG ATCGCGTTCG CGAGATTCAG
AAGATTAGCC AGGAGCCTGT TTCTCTTGAA ACACCTATTG GAGAAGAAGA AGATTCCCAG
CTTGGAGACT TTATTGAAGA CTCTACAGCT GTTGCTCCAC CAGATGCAGC TTCTGATTCA
ATGCTTCGTG AGCAGCTCGA GCAGGTTCTT GACAGCCTTG CTGATCGTGA GCGTAAGGTT
ATTAAGTTCC GCTTTGGTCT TGAGGACGGT CACCCTCGCA CTCTTGAAGA GGTGGGTAAG
GAGTTTGGTG TTACGCGTGA GCGTATTCGT CAGATTGAGT CAAAGACTTT GGCAAAGCTT
CGTCATCCCT CTAGGTCCGG TCGTCTTAAG GACTATATGG AGGAGTAG
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| Protein sequence | MAAKKANDEV KLSDELTKIV DDLVSSSKSN GSISEDDIQV AIRDIDVNDD ELSDLYDSLR
VKGIEITTAS EATVSFAIED DAAEDDFSSD DDLDNSSDFE DEDDEDFDVV NEAREVKEAL
RSVSKAKVSK PKRSSRARAR RSDTTTVMLT GDPVRMYLKE IGKVDLLTAS EEVHLAMKIE
AGTAASQKLE DFEDGLIELN RAEQRRLMRI ESVGLDAKQQ LISANLRLVV SIAKRYVGRG
MLFLDLIQEG NLGLIRAVEK FDYTKGFKFS TYATWWIRQA ITRAIADQAR TIRIPVHMVE
TINKLIRVQR QLLQDFGRDP TPEEIGSEMG MSPDRVREIQ KISQEPVSLE TPIGEEEDSQ
LGDFIEDSTA VAPPDAASDS MLREQLEQVL DSLADRERKV IKFRFGLEDG HPRTLEEVGK
EFGVTRERIR QIESKTLAKL RHPSRSGRLK DYMEE
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