| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0800 |
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| Symbol | |
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| ID | 8413665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 881475 |
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| End bp | 882566 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 645022382 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_003179820 |
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| Protein GI | 257784603 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.873611 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.99103 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTCGC TTCAAACCAT CATTTCAACC TGTGCATCTG CAGCAGGTCT TTCTTCGCAT
ATTGTTCCTT TTGCAGCAGG TAACTCACTC AAGGAGCGCC TGTCCGCTAA TCCTGTGCTC
ATGGCTCCCA TGGCCGGCGT CAGTGATGGT GTATATCGCA CTATGGCTCG AGCAGGCGGA
GCAGGTCTTG CCTATTCAGA GATGGTTTCT GTTGCAGGAA TTCACTTTGG TGGCGAGAAA
ACCTGGGAGC TTGTAGAGCC TCTTTCTACA GAGCCTGATA TTGCCGTTCA ACTTTTTGGT
TCAAAACCGG AGCAGTTTAA AGAAGCTGCA GCACAGATTA GTGAGCGCCT AGGAAATAAA
CTTGCCCTTA TTGATATTAA TATGGCCTGT CCTGTTCCTA AGGTTGTTAA AAAAGGGGAG
GGCTCAGCCC TTCTAGATAC TCCAGAACTT GCTGCAAATT TGGTAAAAGC TTGTCTTTCA
GAGGTTACTG TACCTGTTAC CGTCAAGATT AGACGAGGAA GACGGCAGGA TGAGGAAGTG
GCGCCTGAAT TTGCTCGTGC TATGGAAGCA GCTGGTGCAT CTGCCATTGC TGTTCATGGA
CGTTTTGCTA CACAGATGTA TCGAGGTCAA GCAGAGTGGG AGACGGTTAA TAGAGTTTGT
GATGCCGTAT CTATTCCTGT AATAGGTTCT GGTGACATGC TCTCTGCTGA AGATGTAGCT
CATGCTCTTA AAGAAACAGG TGTGACTGCT GTTATGATTG CTCGCGGAAC ATACGGAAAT
CCTTGGATCT TTAAGAACAC TCAAGCTTTA CTTGAGGGTA AAACTCCCTT TGTTCCATCA
GTTGATCAAA TGCTTGCGTC GTTCATGATG CACGTAAAGT TACTCGATGC TGCCCACATT
CATATTGCCC GTGCAAGAAG CCTCTCTACC TGGTATTTTA GAGGTATTCC AAATGCAGCT
TATTGGCGTG GCAAGTCAGT GAGATGTGTT ACTGCTCAAG ATTTTATTGA TCTTGCATTA
GAAATTAAAG AAACAGTTAC ACAACTTGTG GGCAAACAAG AAGCATCTGA ACACAAGCTG
TCTTTAAGCT AG
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| Protein sequence | MKSLQTIIST CASAAGLSSH IVPFAAGNSL KERLSANPVL MAPMAGVSDG VYRTMARAGG
AGLAYSEMVS VAGIHFGGEK TWELVEPLST EPDIAVQLFG SKPEQFKEAA AQISERLGNK
LALIDINMAC PVPKVVKKGE GSALLDTPEL AANLVKACLS EVTVPVTVKI RRGRRQDEEV
APEFARAMEA AGASAIAVHG RFATQMYRGQ AEWETVNRVC DAVSIPVIGS GDMLSAEDVA
HALKETGVTA VMIARGTYGN PWIFKNTQAL LEGKTPFVPS VDQMLASFMM HVKLLDAAHI
HIARARSLST WYFRGIPNAA YWRGKSVRCV TAQDFIDLAL EIKETVTQLV GKQEASEHKL
SLS
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