| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0777 |
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| Symbol | |
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| ID | 8413642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 856576 |
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| End bp | 858129 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022359 |
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| Product | RNA binding metal dependent phosphohydrolase |
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| Protein accession | YP_003179797 |
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| Protein GI | 257784580 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1418] Predicted HD superfamily hydrolase |
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| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000796077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.068248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTAG CAGGAGTTGG CATTGTTTGC CTTCTTGTGG GAGTAGGCCT TGCATACGGC
GTGCTCTCTA ACATCAGTAA TTCAAAGATT AAAACTGCAG AGCAGCAGTT AAAAGATGCT
CAGACTAATG CAGATCGTAT TGCTTCTGAA GCAACTCGCC AGGCAGAAAC AGTTAAAAAG
GAAGCTGTTC TTGAGGCTAA AGAAGAGGTT CTTCAGCTTA AGCAGGCAGC AGAGGCAGAC
GAGAAGAAGC GCAAGAGCGA GCTTCGCAGC ATGGAGAATC GTATTCTTCA GCGTGAAGAA
TCTCTTGATC ACCGTACCGA CGCATTAGAA AAGCGTGAGC ATCAACTTTC TAGTCTTCAA
GGTCAGCTTG ATCGTCGTAA GAACGATTTA GACTCTCTTG TGTCTCAGCA ATCTCAAGAG
CTTGAGCGCA TTGCAGCTCT TACAAAAGAC GAAGCTCATG ATGAGCTTCT AGCTCGTGTT
CGTTCAGAAA GCGTTCGTGA TGAGGCAATG ATTCTTCGTG AGTCTGAGCA GCGCGTTCGT
GCACAGGCAG ATAAAACTGC TCGTGAGATT ATTTCTACTG CCATTCAGCG TGTTGCTGCA
GATCAGGCTT CTGAGATTAC CGTTACTTCT GTTCATATTC CATCCGATGA TTTAAAGGGT
AGGATTATTG GACGCGAAGG CCGCAACATT CGTACTTTTG AGCAAGTATC TGGTGTTTCT
CTTGTTATTG ATGACACTCC AGAGACTGTT GTTCTTTCCA GTTTTGACCC CGTCCGTCGT
GAGACTGCTC GCGTTGCTCT TGAGAATCTT ATTGCAGATG GTCGTATTCA TCCTGCACGT
ATTGAGGAGC TCTATAAGAA AGCTGAAGCC CTCGTTAACG AGCGTGTTCT TGAGGCTGGT
GAGCAGGCCG CATTTGATTG TGGTATTCAT GATCTACATC CAGAGATTGT TAAGACGCTT
GGTAAGCTTC GTTACCGCAC TTCTTATGGT CAGAATGTTC TTGCCCACTC AGTTCAGGTT
GCAGTACTTT GTGGCATTAT GGCTGAAGAG CTTGGTCTTG AACCTGCTCC AGCAAAGCGG
GCCGGTCTTC TCCATGACCT TGGTAAGGCA ATCGATCACG AAGTCGAAGG TCCACACGCT
GTAATTGGTG CAGATCTTGC TCGTCGTTAT GGTGAGCGTC CAGAGATTGT TCATGCAATT
GAAGCTCACC ACGCAGATAT TGAGCCAAAC ACCGTTCTTG ACATGCTTGT CATGGCCGCA
GATGCAATTT CTGCTGCTCG TCCTGGTGCT CGTCGTGAGT CCGCTGAAAA CTACATTAAG
CGTCTAGAGA AGCTTGAGGC AATCTCTAAT GCTCATGAGG GCGTTGAGCG TACTTACGCA
ATGCAGGCTG GCCGTGAGCT TCATGTAATG GTTGAGCCTC AAATGATTAG TGATTCCGAG
GCAACTGTTC TTGCTCATGA TATTGCTAAG CAAATTGAGG ATGAGATGGA ATATCCAGGA
CAGGTTCGCG TTGTTGTTAT TCGTGAGTCT CGTGCCGTAG ATGTAGCTAA ATAA
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| Protein sequence | MELAGVGIVC LLVGVGLAYG VLSNISNSKI KTAEQQLKDA QTNADRIASE ATRQAETVKK
EAVLEAKEEV LQLKQAAEAD EKKRKSELRS MENRILQREE SLDHRTDALE KREHQLSSLQ
GQLDRRKNDL DSLVSQQSQE LERIAALTKD EAHDELLARV RSESVRDEAM ILRESEQRVR
AQADKTAREI ISTAIQRVAA DQASEITVTS VHIPSDDLKG RIIGREGRNI RTFEQVSGVS
LVIDDTPETV VLSSFDPVRR ETARVALENL IADGRIHPAR IEELYKKAEA LVNERVLEAG
EQAAFDCGIH DLHPEIVKTL GKLRYRTSYG QNVLAHSVQV AVLCGIMAEE LGLEPAPAKR
AGLLHDLGKA IDHEVEGPHA VIGADLARRY GERPEIVHAI EAHHADIEPN TVLDMLVMAA
DAISAARPGA RRESAENYIK RLEKLEAISN AHEGVERTYA MQAGRELHVM VEPQMISDSE
ATVLAHDIAK QIEDEMEYPG QVRVVVIRES RAVDVAK
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