| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0768 |
|---|
| Symbol | |
|---|
| ID | 8413633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 848864 |
|---|
| End bp | 849310 |
|---|
| Gene Length | 447 bp |
|---|
| Protein Length | 148 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 645022350 |
|---|
| Product | ATP-cone domain protein |
|---|
| Protein accession | YP_003179788 |
|---|
| Protein GI | 257784571 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
|---|
| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.376123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.291011 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTGTC CAAAATGCGG TCACGAAGAG TCAAAGGTTA TTGATTCTCG TTCATCTGAG
AATAACGATG CTATTAGAAG GCGTCGCGAA TGCATGTCCT GTAAGTTTCG TTTTACAACT
TATGAGCGCT TAGAAGAGAT TCCTATCACC GTTGTAAAGA AGGACGGTCA CAAGGAGCCT
TTTGATAGGC AGAAACTTAT GAGAGGTCTT GTAGCTGCAA CAGTAAAGAG AGATATCTCT
GTTGCCTCTC TTGATCACTT TATTGATGGA ATTGAGTCTC AGATTAGAGA TAAAGGTCAA
TACGAGATTA AATCTGAAGA CCTTGGAAGC ATTGTGCTTA AAAACCTCGT TATGCTTGAT
AAGGTTGCAT ACATTAGGTT TGCTTCTGTC TATAGAGACT TCAAAGATGT TGATGAATTT
AGCGCAGAGT TAAGGAGCCT TAATTAA
|
|---|
| Protein sequence | MRCPKCGHEE SKVIDSRSSE NNDAIRRRRE CMSCKFRFTT YERLEEIPIT VVKKDGHKEP
FDRQKLMRGL VAATVKRDIS VASLDHFIDG IESQIRDKGQ YEIKSEDLGS IVLKNLVMLD
KVAYIRFASV YRDFKDVDEF SAELRSLN
|
|---|
| |